Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DR994_RS05425 Genome accession   NZ_CP030927
Coordinates   1056797..1057240 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051797..1062240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS09675 (DR994_05560) - 1052307..1052570 (-) 264 WP_217423210.1 hypothetical protein -
  DR994_RS05410 (DR994_05565) - 1052684..1053055 (-) 372 WP_002945426.1 hypothetical protein -
  DR994_RS05415 (DR994_05570) rcrQ 1053211..1054989 (-) 1779 WP_022096860.1 ABC transporter ATP-binding protein Regulator
  DR994_RS05420 (DR994_05575) rcrP 1054979..1056793 (-) 1815 WP_022096861.1 ABC transporter ATP-binding protein Regulator
  DR994_RS05425 (DR994_05580) rcrR 1056797..1057240 (-) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  DR994_RS05430 (DR994_05585) - 1057430..1057840 (-) 411 WP_011680804.1 peptide deformylase -
  DR994_RS05435 (DR994_05590) gdhA 1058098..1059450 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  DR994_RS05440 (DR994_05595) - 1059794..1060900 (+) 1107 Protein_1045 AAA family ATPase -
  DR994_RS05445 (DR994_05600) - 1060964..1061718 (+) 755 Protein_1046 NUDIX hydrolase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=302358 DR994_RS05425 WP_002945408.1 1056797..1057240(-) (rcrR) [Streptococcus thermophilus strain CS9]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=302358 DR994_RS05425 WP_002945408.1 1056797..1057240(-) (rcrR) [Streptococcus thermophilus strain CS9]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment