Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DR994_RS05415 Genome accession   NZ_CP030927
Coordinates   1053211..1054989 (-) Length   592 a.a.
NCBI ID   WP_022096860.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048211..1059989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS05385 (DR994_05535) - 1048782..1048997 (-) 216 WP_002944188.1 YozE family protein -
  DR994_RS05390 (DR994_05540) cvfB 1049006..1049863 (-) 858 WP_022096857.1 RNA-binding virulence regulatory protein CvfB -
  DR994_RS05395 (DR994_05545) frr 1049954..1050511 (-) 558 WP_011225565.1 ribosome recycling factor -
  DR994_RS05400 (DR994_05550) pyrH 1050526..1051263 (-) 738 WP_002949867.1 UMP kinase -
  DR994_RS10000 - 1051499..1052337 (-) 839 Protein_1037 HAMP domain-containing sensor histidine kinase -
  DR994_RS09675 (DR994_05560) - 1052307..1052570 (-) 264 WP_217423210.1 hypothetical protein -
  DR994_RS05410 (DR994_05565) - 1052684..1053055 (-) 372 WP_002945426.1 hypothetical protein -
  DR994_RS05415 (DR994_05570) rcrQ 1053211..1054989 (-) 1779 WP_022096860.1 ABC transporter ATP-binding protein Regulator
  DR994_RS05420 (DR994_05575) rcrP 1054979..1056793 (-) 1815 WP_022096861.1 ABC transporter ATP-binding protein Regulator
  DR994_RS05425 (DR994_05580) rcrR 1056797..1057240 (-) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  DR994_RS05430 (DR994_05585) - 1057430..1057840 (-) 411 WP_011680804.1 peptide deformylase -
  DR994_RS05435 (DR994_05590) gdhA 1058098..1059450 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65166.15 Da        Isoelectric Point: 4.9424

>NTDB_id=302356 DR994_RS05415 WP_022096860.1 1053211..1054989(-) (rcrQ) [Streptococcus thermophilus strain CS9]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDILSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMSFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESDKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=302356 DR994_RS05415 WP_022096860.1 1053211..1054989(-) (rcrQ) [Streptococcus thermophilus strain CS9]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACTAATCTTATTACAG
ATGGTATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACATACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGAGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCAATGTGGCAATCTCAGTTTATCTCTGGTATTATGATGCCACTTATGATTTTCATCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCTGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGACAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTATGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689

Multiple sequence alignment