Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DS737_RS16335 Genome accession   NZ_CP030880
Coordinates   3114827..3115687 (+) Length   286 a.a.
NCBI ID   WP_113997818.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3109827..3120687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS737_RS14390 secG 3110351..3110680 (-) 330 WP_004637686.1 preprotein translocase subunit SecG -
  DS737_RS14395 tpiA 3110693..3111484 (-) 792 WP_005088004.1 triose-phosphate isomerase -
  DS737_RS14400 pilB 3111861..3113576 (+) 1716 WP_005083851.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DS737_RS14405 pilC 3113601..3114827 (+) 1227 WP_113997817.1 type II secretion system F family protein Machinery gene
  DS737_RS16335 pilD 3114827..3115687 (+) 861 WP_113997818.1 A24 family peptidase Machinery gene
  DS737_RS14415 coaE 3115689..3116294 (+) 606 WP_113997819.1 dephospho-CoA kinase -
  DS737_RS14420 - 3116291..3117202 (-) 912 WP_113997820.1 DMT family transporter -
  DS737_RS14430 rlmB 3117242..3117988 (-) 747 WP_004637678.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DS737_RS14435 - 3118096..3118422 (-) 327 WP_004637677.1 pyrimidine/purine nucleoside phosphorylase -
  DS737_RS14440 recN 3118756..3120417 (+) 1662 WP_113997821.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32062.37 Da        Isoelectric Point: 6.4294

>NTDB_id=302043 DS737_RS16335 WP_113997818.1 3114827..3115687(+) (pilD) [Acinetobacter haemolyticus strain HW-2A]
MQQFLNYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPRMMEQEWQQECQILLHPEQPIIEEEKLTLSQPASTCPKCHTP
IRWYQNIPVISWLVLRGKCAACQNPISIRYPLIELLTMGCSLVVVAVFGPTLQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWIVYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSV
VGAIIGIILLKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=302043 DS737_RS16335 WP_113997818.1 3114827..3115687(+) (pilD) [Acinetobacter haemolyticus strain HW-2A]
ATGCAGCAATTCTTAAATTATTTTATCGAAAACCCAACTGCACTTTATCTAGCAGTTGGGCTTTTTAGTTTATGTATTGG
TAGCTTTCTGAATGTTGTTATTTTCCGAACGCCAAGAATGATGGAGCAGGAATGGCAACAAGAATGCCAAATACTACTCC
ATCCAGAACAACCTATCATTGAAGAAGAAAAGCTGACTTTAAGTCAACCGGCATCAACTTGCCCAAAGTGCCACACCCCT
ATCCGCTGGTATCAAAATATCCCAGTGATCAGCTGGTTAGTACTCCGTGGTAAATGCGCTGCCTGTCAAAACCCGATTAG
TATTCGTTACCCATTGATCGAGTTATTGACCATGGGATGCTCTCTAGTGGTCGTTGCTGTTTTTGGTCCTACCCTCCAAA
TGCTATTCGGTTTAGTTCTGACTTGGGTGTTAATTACCCTTACTTTTATTGATTTTGATACACAATTGCTTCCAGACCGC
TTTACACTCCCATTGGCAGCACTCGGTTTAGCCATTAATAGTTTTGCGATCTACACCACAGCAAACTCAGCAATTTGGGG
TTATGTGATTGGCTTCCTTTGCCTTTGGATTGTTTATTATCTTTTTAAAATATTTACTGGCAAAGAGGGTATGGGCTATG
GCGATTTTAAATTACTGGCTGCATTAGGGGCTTGGATGGGTCCAATGCTCTTGCCTTTAATTGTGTTACTTTCTTCTGTT
GTCGGTGCAATTATTGGTATCATCTTATTGAAAATGCGCGGTGAAAATCAGCCCTTTGCTTTTGGCCCCTATATTGCAAT
TGCAGGCTGGATCGCATTTTTATGGGGTGATCAAATTATGAAAGTTTATTTAGGTGGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

84.266

100

0.843
  pilD Acinetobacter baumannii D1279779

83.217

100

0.832
  pilD Vibrio cholerae strain A1552

55.97

93.706

0.524
  pilD Vibrio campbellii strain DS40M4

54.135

93.007

0.503
  pilD Neisseria gonorrhoeae MS11

47.619

95.455

0.455

Multiple sequence alignment