Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ETT61_RS09975 Genome accession   NZ_CP035438
Coordinates   1934702..1935808 (+) Length   368 a.a.
NCBI ID   WP_136020076.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm22.8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929702..1940808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT61_RS09955 (ETT61_09945) hasA 1930380..1931639 (+) 1260 WP_136020080.1 hyaluronan synthase HasA -
  ETT61_RS09960 (ETT61_09950) hasB 1931675..1932883 (+) 1209 WP_136020079.1 UDP-glucose 6-dehydrogenase HasB -
  ETT61_RS09965 (ETT61_09960) hasC 1933065..1933979 (+) 915 WP_136020078.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  ETT61_RS09970 (ETT61_09965) yaaA 1934287..1934700 (+) 414 WP_136020077.1 S4 domain-containing protein YaaA -
  ETT61_RS09975 (ETT61_09970) recF 1934702..1935808 (+) 1107 WP_136020076.1 DNA replication/repair protein RecF Machinery gene
  ETT61_RS09980 (ETT61_09975) - 1935864..1936727 (-) 864 WP_002992310.1 GRP family sugar transporter -
  ETT61_RS09985 (ETT61_09980) guaB 1936929..1938410 (-) 1482 WP_136020075.1 IMP dehydrogenase -
  ETT61_RS09990 (ETT61_09985) trpS 1938688..1939710 (-) 1023 WP_085614067.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41824.75 Da        Isoelectric Point: 8.4064

>NTDB_id=301980 ETT61_RS09975 WP_136020076.1 1934702..1935808(+) (recF) [Streptococcus pyogenes strain emm22.8]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=301980 ETT61_RS09975 WP_136020076.1 1934702..1935808(+) (recF) [Streptococcus pyogenes strain emm22.8]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTGAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAACGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAACAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTTCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462