Detailed information NTG0030198

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SPT_RS11105
• Genome accession: NC_012469
• Coordinates: 2096657..2097754 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae Taiwan19F-14
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2091657..2102754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPT_RS11080 (SPT_2240)	pgsA	2092178..2092723 (-)	546	WP_000712136.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SPT_RS11085 (SPT_2241)	rodZ	2092734..2093555 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
SPT_RS11090 (SPT_2242)	yfmH	2093597..2094880 (-)	1284	WP_000170193.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SPT_RS11095 (SPT_2243)	yfmF	2094877..2096127 (-)	1251	WP_000424257.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SPT_RS11100 (SPT_2244)	yaaA	2096286..2096654 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
SPT_RS11105 (SPT_2245)	recF	2096657..2097754 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
SPT_RS11110 (SPT_2246)	guaB	2097805..2099283 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
SPT_RS11115 (SPT_2247)	trpS	2099435..2100460 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
SPT_RS11120 (SPT_2248)	-	2100666..2102288 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=30198 SPT_RS11105 WP_000266662.1 2096657..2097754(+) (recF) [Streptococcus pneumoniae Taiwan19F-14]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=30198 SPT_RS11105 WP_000266662.1 2096657..2097754(+) (recF) [Streptococcus pneumoniae Taiwan19F-14]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46