Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DSM08_RS17665 Genome accession   NZ_CP030848
Coordinates   4185818..4187206 (+) Length   462 a.a.
NCBI ID   WP_149527370.1    Uniprot ID   -
Organism   Sphingobacterium hotanense strain AMCC101218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4180818..4192206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM08_RS17645 - 4181663..4183393 (+) 1731 WP_149527366.1 serine hydrolase -
  DSM08_RS17650 - 4183393..4184559 (+) 1167 WP_246172345.1 dipeptidase -
  DSM08_RS17655 - 4184601..4185242 (-) 642 WP_149527368.1 hypothetical protein -
  DSM08_RS17660 - 4185242..4185748 (-) 507 WP_149527369.1 RNA polymerase sigma factor -
  DSM08_RS17665 radA 4185818..4187206 (+) 1389 WP_149527370.1 DNA repair protein RadA Machinery gene
  DSM08_RS17670 - 4187470..4188597 (-) 1128 WP_149527371.1 TlpA disulfide reductase family protein -
  DSM08_RS17675 - 4188644..4189477 (-) 834 WP_149527372.1 YgcG family protein -
  DSM08_RS17680 - 4189482..4189916 (-) 435 WP_149527373.1 TPM domain-containing protein -
  DSM08_RS17685 - 4190081..4190659 (-) 579 WP_149527374.1 LemA family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50730.01 Da        Isoelectric Point: 6.5074

>NTDB_id=301870 DSM08_RS17665 WP_149527370.1 4185818..4187206(+) (radA) [Sphingobacterium hotanense strain AMCC101218]
MAKTKSAYFCQSCGYDSPKWLGQCPSCKQWNSFVEEVVEKSSSRVPEWRSTASSKAETKRANKAAIIHEIVYSEEQRIVT
PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALTVSHVKTIYISGEESEQQIKMRAERLVQTSNANCYILTETSM
QNIFKQIDQVQPNLLVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRNHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGTAVAAMLEGMRPLMIEVQALVS
NSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIAAIISSQQDIPLGSNITFAGE
VGLSGEIRAVNRIEQRIQEAEKLGFGQIFISKYNTKGLDAKKYDIAIRPVATLEDVFSALFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=301870 DSM08_RS17665 WP_149527370.1 4185818..4187206(+) (radA) [Sphingobacterium hotanense strain AMCC101218]
ATGGCTAAAACTAAATCGGCATACTTCTGCCAATCCTGTGGATATGACTCGCCTAAATGGTTAGGACAATGTCCTTCTTG
TAAGCAATGGAATTCTTTTGTTGAAGAAGTGGTTGAGAAATCTTCCTCCCGTGTACCCGAATGGCGAAGCACCGCCAGTT
CTAAGGCAGAAACTAAGCGGGCCAACAAAGCCGCTATCATCCATGAAATTGTCTATTCGGAGGAACAACGTATCGTTACT
CCCGATAAAGAATTCAACCGCGTATTAGGCGGAGGAATTGTTCCAGGTTCCCTAGTACTAATCGGTGGAGAACCGGGGAT
TGGTAAATCTACCCTAATGCTTCAATTAGCACTTACGGTCTCTCACGTGAAAACCATATATATCTCCGGGGAGGAAAGCG
AGCAGCAGATTAAGATGCGCGCTGAACGTCTCGTTCAGACGTCAAACGCCAACTGTTATATCTTGACGGAGACTTCGATG
CAGAATATCTTTAAGCAGATTGATCAGGTACAGCCAAACCTGTTAGTCATCGACTCCATACAGACCCTACATTCCGCACA
GATTGAATCAGCTCCGGGCTCCGTATCGCAAGTGCGCGAGTGTACCGCAGAACTGCTTCGTTTTGCGAAGGAAACCAATA
CACCGGTATTTATTGTGGGCCACATCACCAAAGACGGATCGATAGCAGGGCCAAAGGTATTGGAACATATGGTCGATACG
GTATTGCAGTTTGAAGGCGATAGAAATCATGTCTACCGAATCCTACGGGCAGTAAAAAACCGCTTTGGCTCATCGTCAGA
ACTGGGAATTTATGAGATGCAAGGCTCAGGCCTTCGAGAAGTATCGAATCCTTCGGAAATAATGCTGTCGCAACGCGAAG
AGCAGGTGAGCGGTACGGCAGTAGCTGCCATGCTAGAAGGCATGCGCCCCTTAATGATCGAAGTGCAGGCCTTAGTCTCC
AATTCAGCCTACGGAACCCCACAAAGGAGTTCTACCGGATTTGACACCAAACGTTTGAATATGCTCTTAGCCGTTCTAGA
GAAACGCTTCGGCTTCCGCCTTAGCGCACAGGATGTCTTCCTGAATATTGCCGGTGGACTACGCGTCGAAGACCCTGCGA
TCGACCTCGCCGTAATCGCTGCAATCATATCATCACAGCAAGATATCCCGCTAGGCTCTAACATCACCTTCGCCGGCGAA
GTAGGCCTCTCCGGAGAGATACGCGCCGTAAACCGAATCGAACAACGCATACAAGAAGCCGAAAAACTAGGCTTCGGACA
GATATTCATCTCTAAATACAACACCAAAGGACTCGACGCTAAGAAATATGATATCGCTATCCGCCCAGTCGCGACGTTGG
AAGATGTGTTTAGTGCTTTATTTGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.829

96.104

0.517
  radA Streptococcus pneumoniae Rx1

51.299

100

0.513
  radA Streptococcus pneumoniae D39

51.299

100

0.513
  radA Streptococcus pneumoniae R6

51.299

100

0.513
  radA Streptococcus pneumoniae TIGR4

51.299

100

0.513
  radA Streptococcus mitis NCTC 12261

51.299

100

0.513
  radA Streptococcus mitis SK321

51.082

100

0.511

Multiple sequence alignment