Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DSN71_RS02445 Genome accession   NZ_CP030845
Coordinates   405358..406392 (+) Length   344 a.a.
NCBI ID   WP_000732713.1    Uniprot ID   A0AAV3JGP6
Organism   Streptococcus agalactiae strain S73     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 400358..411392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSN71_RS02405 (DSN71_02405) tsaE 400434..400877 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DSN71_RS02410 (DSN71_02410) - 400870..401391 (+) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  DSN71_RS02415 (DSN71_02415) - 401400..402707 (+) 1308 WP_000708156.1 LCP family protein -
  DSN71_RS02420 (DSN71_02420) - 402771..403067 (-) 297 WP_000690175.1 hypothetical protein -
  DSN71_RS02425 (DSN71_02425) - 403064..403483 (-) 420 WP_000368097.1 HIT family protein -
  DSN71_RS02430 (DSN71_02430) - 403819..404322 (+) 504 WP_017647758.1 hypothetical protein -
  DSN71_RS02435 (DSN71_02435) - 404374..404559 (-) 186 WP_000368100.1 hypothetical protein -
  DSN71_RS02440 (DSN71_02440) pptA 404631..405356 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  DSN71_RS02445 (DSN71_02445) pptB 405358..406392 (+) 1035 WP_000732713.1 ABC transporter permease Regulator
  DSN71_RS02450 (DSN71_02450) - 406450..407250 (+) 801 WP_000155919.1 phosphotransferase family protein -
  DSN71_RS02455 (DSN71_02455) trmB 407240..407875 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DSN71_RS02465 (DSN71_02465) rimP 408365..408841 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  DSN71_RS02470 (DSN71_02470) nusA 408877..410028 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  DSN71_RS02475 (DSN71_02475) - 410050..410346 (+) 297 WP_001140526.1 YlxR family protein -
  DSN71_RS02480 (DSN71_02480) - 410339..410641 (+) 303 WP_001065560.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40206.54 Da        Isoelectric Point: 10.4988

>NTDB_id=301830 DSN71_RS02445 WP_000732713.1 405358..406392(+) (pptB) [Streptococcus agalactiae strain S73]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDSILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=301830 DSN71_RS02445 WP_000732713.1 405358..406392(+) (pptB) [Streptococcus agalactiae strain S73]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAACGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTAATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAAGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ACTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATAGCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485

  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483


Multiple sequence alignment