Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ETT64_RS09090 Genome accession   NZ_CP035435
Coordinates   1764121..1765227 (+) Length   368 a.a.
NCBI ID   WP_009880735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm64.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759121..1770227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT64_RS09065 (ETT64_09060) hasB 1759833..1761041 (+) 1209 WP_002991442.1 UDP-glucose 6-dehydrogenase HasB -
  ETT64_RS09070 (ETT64_09070) hasC 1761223..1762137 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  ETT64_RS09075 (ETT64_09075) - 1762475..1763543 (+) 1069 Protein_1685 ISAs1 family transposase -
  ETT64_RS09085 (ETT64_09085) yaaA 1763706..1764119 (+) 414 WP_032464640.1 S4 domain-containing protein YaaA -
  ETT64_RS09090 (ETT64_09090) recF 1764121..1765227 (+) 1107 WP_009880735.1 DNA replication/repair protein RecF Machinery gene
  ETT64_RS09095 (ETT64_09095) - 1765283..1766146 (-) 864 WP_136293057.1 GRP family sugar transporter -
  ETT64_RS09100 (ETT64_09100) guaB 1766338..1767819 (-) 1482 WP_002992312.1 IMP dehydrogenase -
  ETT64_RS09105 (ETT64_09105) trpS 1768127..1769149 (-) 1023 WP_011527823.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41825.74 Da        Isoelectric Point: 7.8294

>NTDB_id=301701 ETT64_RS09090 WP_009880735.1 1764121..1765227(+) (recF) [Streptococcus pyogenes strain emm64.3]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=301701 ETT64_RS09090 WP_009880735.1 1764121..1765227(+) (recF) [Streptococcus pyogenes strain emm64.3]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465