Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DRA68_RS08050 Genome accession   NZ_CP030823
Coordinates   1599358..1599822 (-) Length   154 a.a.
NCBI ID   WP_162818817.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 14-627     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1598736..1609874 1599358..1599822 within 0


Gene organization within MGE regions


Location: 1598736..1609874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA68_RS11310 - 1598736..1599194 (-) 459 WP_234034813.1 hypothetical protein -
  DRA68_RS08050 (DRA68_09505) comE 1599358..1599822 (-) 465 WP_162818817.1 ComEA family DNA-binding protein Machinery gene
  DRA68_RS08080 (DRA68_09545) - 1605622..1606428 (-) 807 WP_002221447.1 inner membrane protein YpjD -
  DRA68_RS08085 (DRA68_09550) ffh 1606648..1608018 (+) 1371 WP_002221448.1 signal recognition particle protein -
  DRA68_RS08090 (DRA68_09555) dsbA2 1608349..1609044 (-) 696 WP_002215704.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DRA68_RS08095 (DRA68_09560) - 1609215..1609874 (-) 660 WP_002218694.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16591.81 Da        Isoelectric Point: 10.8773

>NTDB_id=301686 DRA68_RS08050 WP_162818817.1 1599358..1599822(-) (comE) [Neisseria meningitidis strain 14-627]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=301686 DRA68_RS08050 WP_162818817.1 1599358..1599822(-) (comE) [Neisseria meningitidis strain 14-627]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTATTGGCGAAGCTGAAGGACCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment