Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABAYE_RS18410 Genome accession   NC_010410
Coordinates   3740583..3741713 (+) Length   376 a.a.
NCBI ID   WP_001991425.1    Uniprot ID   A0A0J1A8J0
Organism   Acinetobacter baumannii AYE     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3735583..3746713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABAYE_RS18385 (ABAYE3702) - 3735843..3736049 (-) 207 WP_000182542.1 hypothetical protein -
  ABAYE_RS18390 (ABAYE3703) - 3736103..3738217 (-) 2115 WP_001120675.1 TonB-dependent copper receptor -
  ABAYE_RS18395 (ABAYE3704) - 3738290..3738718 (-) 429 WP_000231981.1 DUF2946 family protein -
  ABAYE_RS18400 (ABAYE3705) def 3738755..3739285 (-) 531 WP_001196539.1 peptide deformylase -
  ABAYE_RS18405 (ABAYE3706) tsaP 3739408..3740562 (+) 1155 WP_000755285.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABAYE_RS18410 (ABAYE3707) dprA 3740583..3741713 (+) 1131 WP_001991425.1 DNA-processing protein DprA Machinery gene
  ABAYE_RS18415 (ABAYE3708) - 3741764..3742333 (+) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  ABAYE_RS18420 (ABAYE3709) - 3742725..3743645 (-) 921 WP_001994180.1 DMT family transporter -
  ABAYE_RS18425 (ABAYE3710) - 3743751..3744401 (-) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  ABAYE_RS18430 (ABAYE3711) - 3744538..3745752 (+) 1215 WP_000372838.1 MFS transporter -
  ABAYE_RS18435 (ABAYE3712) - 3745774..3746538 (+) 765 WP_000786955.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41843.48 Da        Isoelectric Point: 6.7530

>NTDB_id=30153 ABAYE_RS18410 WP_001991425.1 3740583..3741713(+) (dprA) [Acinetobacter baumannii AYE]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQKQTKEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=30153 ABAYE_RS18410 WP_001991425.1 3740583..3741713(+) (dprA) [Acinetobacter baumannii AYE]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGACTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGTGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGTCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCCATTATTACGGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCAGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAAACAAACTAAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGATCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0J1A8J0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

97.34

100

0.973

  dprA Acinetobacter baumannii strain A118

97.074

100

0.971

  dprA Acinetobacter baylyi ADP1

70.942

100

0.721

  dprA Vibrio cholerae strain A1552

43.243

88.564

0.383


Multiple sequence alignment