Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   DSB67_RS15955 Genome accession   NZ_CP030789
Coordinates   19064..20365 (+) Length   433 a.a.
NCBI ID   WP_272942005.1    Uniprot ID   -
Organism   Vibrio campbellii strain DS40M4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 14064..25365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS15940 (DSB67_15945) - 14964..15062 (+) 99 Protein_12 ribosome biogenesis GTPase YlqF -
  DSB67_RS15945 (DSB67_15950) - 15193..17187 (-) 1995 WP_033002174.1 hypothetical protein -
  DSB67_RS15950 (DSB67_15955) ylqF 17839..18774 (+) 936 WP_010647032.1 ribosome biogenesis GTPase YlqF -
  DSB67_RS15955 (DSB67_15960) cqsA 19064..20365 (+) 1302 WP_272942005.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  DSB67_RS15960 (DSB67_15965) cqsS 20472..22517 (-) 2046 WP_029388751.1 hybrid sensor histidine kinase/response regulator Regulator
  DSB67_RS15965 (DSB67_15970) - 22822..23439 (+) 618 WP_010647035.1 HAD family hydrolase -
  DSB67_RS15970 (DSB67_15975) - 23779..24327 (-) 549 WP_010647036.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48955.89 Da        Isoelectric Point: 6.2291

>NTDB_id=301527 DSB67_RS15955 WP_272942005.1 19064..20365(+) (cqsA) [Vibrio campbellii strain DS40M4]
MRSLQAHANLCNLTNDIELILVKLYYCQRWRFPVLRRELIMSDKPKTKPLPSFVEERLDFYIEDLIDQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRYGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=301527 DSB67_RS15955 WP_272942005.1 19064..20365(+) (cqsA) [Vibrio campbellii strain DS40M4]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACATCGAGCTCATATTGGTCAAACTATATTACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTGAAGATCTGATTGATCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCG
TGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATTTCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTTACGGCTCTGGCGTTA
TCGTTGTGGATTCAGTCTATAGCACGATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGCATGGGCCGAATGGTTCAGGCTTGGTGAAAGCATTGGAACT
CACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCTGCCATTTTTAGTTCGACGGTTCTGCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGCGAACCATGCTGTTCAACCGCGCTAAGGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCTCAAATTGTGGCTTTAGAGTGCGGTAGTGAGCGAAATACGGAGC
GAGTGCGTGACTTCTTGGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCACGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.436

90.069

0.517

Multiple sequence alignment