Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   DSB67_RS15960 Genome accession   NZ_CP030789
Coordinates   20472..22517 (-) Length   681 a.a.
NCBI ID   WP_029388751.1    Uniprot ID   -
Organism   Vibrio campbellii strain DS40M4     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 15472..27517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS15950 (DSB67_15955) ylqF 17839..18774 (+) 936 WP_010647032.1 ribosome biogenesis GTPase YlqF -
  DSB67_RS15955 (DSB67_15960) cqsA 19064..20365 (+) 1302 WP_272942005.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  DSB67_RS15960 (DSB67_15965) cqsS 20472..22517 (-) 2046 WP_029388751.1 hybrid sensor histidine kinase/response regulator Regulator
  DSB67_RS15965 (DSB67_15970) - 22822..23439 (+) 618 WP_010647035.1 HAD family hydrolase -
  DSB67_RS15970 (DSB67_15975) - 23779..24327 (-) 549 WP_010647036.1 GNAT family N-acetyltransferase -
  DSB67_RS15975 (DSB67_15980) - 24620..25744 (+) 1125 WP_029388752.1 acyl-CoA desaturase -
  DSB67_RS15980 (DSB67_15985) dcuC 26127..27494 (+) 1368 WP_010647038.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77731.55 Da        Isoelectric Point: 5.2089

>NTDB_id=301528 DSB67_RS15960 WP_029388751.1 20472..22517(-) (cqsS) [Vibrio campbellii strain DS40M4]
MDAIRKVYQYAEPNLSLVGWMGFIGFPIYYIVWEFMFPQPYENLSLRILCSILFFGIIYRNRTPFEWRGFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFVQTFVGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMN
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFVNQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDACGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVAFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=301528 DSB67_RS15960 WP_029388751.1 20472..22517(-) (cqsS) [Vibrio campbellii strain DS40M4]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTAGCCTCGTAGGATGGATGGGCTTCATAGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCATACGAAAACCTATCGCTTCGTATTCTTTGCTCAATATTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTGGGTTCTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTACCTTGCTTCTTCTTTTATATGTTGCTTATGAACAATTGGTCGAATGTTTGGGTGATGTCGTTTATGTCGGC
GATTTTTTTGCACATACTGCTCGTGCATATCACATCGGTGATGTTTGTTCAGACATTTGTGGGAATTGGTCTTGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTACTTCCGAAACCAGGTAGAGCATGAAGCAAAAGTCTCAATCGCAAAGTCTTTTGGGGCGGG
TATCGCCCATGAAATGCGAAACCCACTCAGCGGTTTATTAACTTCTATCGATGTCATTCAATCCGTGTTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGATGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAC
ATCATTCATTCCGGAAACGAAACCATTGATTTGCTTCTTACTTCAATTGATGAGAACCGTGTTTCTCGCTCGACATTTAA
AAAACACTCTGCACAATCTGTCGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAACGATCGACAGACCGTTTTGCTATCT
CCTTGGATGTAAGAAGTGAGTTCGATTTCTTGGGCAGCGATACATTGCTTAAGTATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAAGACTTCCACATACACGTCACCATGTACAGTGATGAATTTGTCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCGCCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ACTACGGCCTTGGACTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGCGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGACATGGAG
AGTTTAGACGCCTGTGGCAGCCATATAGATAAGGTTGAGTCATTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATTCAAAGAGCGAGAAGCGTTGCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTCTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGACTCAACA
AACAAGCGAACCATTATGGTGGTTGACGACAATGAGTCTCTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAAGATGGGCTGCAGGCAATCAACGCGTTGAATGAGAACAATGTTGACTTAATCCTGATGGACA
TCGAAATGCCAGTGATGGATGGCGTAGAAGCATCTCGTCAAATTAGAGGTTCAAATAAGGCCTACGCTTCGGTACCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTGGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.029

100

0.483

Multiple sequence alignment