Detailed information NTG0301518

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DSB67_RS12890
• Genome accession: NZ_CP030788
• Coordinates: 2680088..2681074 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain DS40M4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2675088..2686074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DSB67_RS12875 (DSB67_12880)	recA	2675626..2676669 (-)	1044	WP_005531686.1	recombinase RecA	Machinery gene
DSB67_RS12880 (DSB67_12885)	pncC	2676870..2677352 (-)	483	WP_005531683.1	nicotinamide-nucleotide amidase	-
DSB67_RS12885 (DSB67_12890)	mutS	2677438..2679999 (+)	2562	WP_010650370.1	DNA mismatch repair protein MutS	-
DSB67_RS12890 (DSB67_12895)	rpoS	2680088..2681074 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
DSB67_RS12895 (DSB67_12900)	-	2681155..2682078 (-)	924	WP_010650368.1	peptidoglycan DD-metalloendopeptidase family protein	-
DSB67_RS12900 (DSB67_12905)	-	2682093..2682719 (-)	627	WP_010650366.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DSB67_RS12905 (DSB67_12910)	surE	2682719..2683495 (-)	777	WP_010650364.1	5'/3'-nucleotidase SurE	-
DSB67_RS12910 (DSB67_12915)	truD	2683495..2684538 (-)	1044	WP_010650362.1	tRNA pseudouridine(13) synthase TruD	-
DSB67_RS12915 (DSB67_12920)	ispF	2684584..2685060 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DSB67_RS12920 (DSB67_12925)	ispD	2685075..2685785 (-)	711	WP_010650360.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DSB67_RS12925 (DSB67_12930)	ftsB	2685787..2686068 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=301518 DSB67_RS12890 WP_005425361.1 2680088..2681074(-) (rpoS) [Vibrio campbellii strain DS40M4]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=301518 DSB67_RS12890 WP_005425361.1 2680088..2681074(-) (rpoS) [Vibrio campbellii strain DS40M4]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCGGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTTAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTAATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGCCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTTGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACTTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857