Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   DSB67_RS12615 Genome accession   NZ_CP030788
Coordinates   2630258..2630875 (+) Length   205 a.a.
NCBI ID   WP_010649744.1    Uniprot ID   -
Organism   Vibrio campbellii strain DS40M4     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2625258..2635875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS12595 (DSB67_12600) - 2625540..2626457 (-) 918 WP_010649750.1 ABC transporter ATP-binding protein -
  DSB67_RS12600 (DSB67_12605) - 2626697..2628367 (-) 1671 WP_010649748.1 SulP family inorganic anion transporter -
  DSB67_RS12605 (DSB67_12610) can 2628651..2629319 (+) 669 WP_005531727.1 carbonate dehydratase -
  DSB67_RS12610 (DSB67_12615) hpt 2629406..2629936 (-) 531 WP_010649745.1 hypoxanthine phosphoribosyltransferase -
  DSB67_RS12615 (DSB67_12620) opaR 2630258..2630875 (+) 618 WP_010649744.1 transcriptional regulator OpaR Regulator
  DSB67_RS12625 (DSB67_12630) lpdA 2631256..2632686 (-) 1431 WP_005531721.1 dihydrolipoyl dehydrogenase -
  DSB67_RS12630 (DSB67_12635) aceF 2632930..2634858 (-) 1929 WP_010643271.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23711.98 Da        Isoelectric Point: 6.3318

>NTDB_id=301514 DSB67_RS12615 WP_010649744.1 2630258..2630875(+) (opaR) [Vibrio campbellii strain DS40M4]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAHLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=301514 DSB67_RS12615 WP_010649744.1 2630258..2630875(+) (opaR) [Vibrio campbellii strain DS40M4]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCT
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGATCAACATGAACCGGAA
CACTTGGCGAATCTTTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCACACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

99.512

0.951
  hapR Vibrio cholerae C6706

71.212

96.585

0.688
  hapR Vibrio cholerae strain A1552

71.212

96.585

0.688

Multiple sequence alignment