Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DPR03_RS01790 Genome accession   NZ_CP030754
Coordinates   369015..369650 (-) Length   211 a.a.
NCBI ID   WP_071319847.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364015..374650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS01755 mlaE 364141..364920 (+) 780 WP_004809853.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  DPR03_RS01760 - 364920..365597 (+) 678 WP_071319844.1 outer membrane lipid asymmetry maintenance protein MlaD -
  DPR03_RS01765 - 365615..366250 (+) 636 WP_004809849.1 phospholipid-binding protein MlaC -
  DPR03_RS01770 - 366263..366553 (+) 291 WP_005223368.1 STAS domain-containing protein -
  DPR03_RS01775 - 366823..367836 (-) 1014 WP_071319845.1 CorA family divalent cation transporter -
  DPR03_RS01780 - 367990..368580 (+) 591 WP_071319846.1 TIGR00730 family Rossman fold protein -
  DPR03_RS01785 - 368612..369013 (+) 402 WP_048881813.1 NUDIX hydrolase -
  DPR03_RS01790 comF 369015..369650 (-) 636 WP_071319847.1 ComF family protein Machinery gene
  DPR03_RS01795 recG 369637..371682 (-) 2046 WP_071319848.1 ATP-dependent DNA helicase RecG -
  DPR03_RS01800 - 371717..372535 (+) 819 WP_071319849.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24346.45 Da        Isoelectric Point: 9.3456

>NTDB_id=301318 DPR03_RS01790 WP_071319847.1 369015..369650(-) (comF) [Acinetobacter schindleri strain H3]
MPMSKLIQQGKHWLDKLQPCQLCHNDYQTIYSVCQDCWNQLPWAHQTIQRQEMQVQIACHYDYPMDRLIQLFKYEQKLYL
ENLLAGALISLKLPKVSAVVPMPISTDKLVQRGYNQSLLLAKQVAKHLQVPVWQPVSRLKQHSQKGLSRLERIEDIEAQF
QISTSSKLRYRKVLIIDDVVTTGSSIRALNQKLQELGCQQIYTACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=301318 DPR03_RS01790 WP_071319847.1 369015..369650(-) (comF) [Acinetobacter schindleri strain H3]
ATGCCTATGTCTAAGCTGATTCAGCAAGGCAAACATTGGCTGGACAAGTTACAACCCTGCCAGCTTTGTCACAACGATTA
TCAAACAATTTACTCAGTATGCCAGGATTGCTGGAACCAGCTACCTTGGGCACATCAGACCATCCAGCGCCAGGAAATGC
AGGTACAGATTGCCTGCCATTATGATTATCCGATGGATCGTCTGATTCAGTTGTTCAAATATGAGCAGAAGCTTTATCTG
GAAAACTTGTTAGCAGGCGCGCTTATCAGTTTGAAACTTCCCAAAGTCAGCGCAGTCGTCCCGATGCCAATCTCGACAGA
CAAATTGGTACAGCGCGGCTATAACCAGTCCTTACTGCTGGCTAAACAGGTCGCAAAGCATCTTCAAGTTCCAGTATGGC
AACCAGTGAGCCGGCTCAAACAGCATTCACAAAAAGGCTTAAGCCGCCTGGAACGGATTGAAGATATTGAAGCACAATTT
CAGATCAGTACATCATCAAAATTGCGTTATCGTAAAGTACTGATTATTGATGATGTGGTAACAACTGGCAGTTCAATTCG
TGCACTTAATCAGAAGCTCCAAGAACTTGGCTGCCAGCAAATTTATACAGCCTGTGTCGCAGGTGCAAAGCTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.622

91.469

0.555
  comF Acinetobacter baumannii D1279779

60.104

91.469

0.55

Multiple sequence alignment