Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C1S65_RS08185 Genome accession   NZ_CP030750
Coordinates   1723850..1726072 (+) Length   740 a.a.
NCBI ID   WP_112897748.1    Uniprot ID   A0AAD0PER5
Organism   Pseudomonas putida strain NX-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1718850..1731072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S65_RS08165 (C1S65_08165) - 1720718..1721341 (+) 624 WP_112897747.1 glutathione S-transferase -
  C1S65_RS08170 (C1S65_08170) - 1721489..1722421 (+) 933 WP_063543816.1 ABC transporter ATP-binding protein -
  C1S65_RS08175 (C1S65_08175) - 1722418..1723197 (+) 780 WP_054893055.1 ABC transporter permease -
  C1S65_RS08180 (C1S65_08180) - 1723081..1723707 (-) 627 WP_151924181.1 DUF2062 domain-containing protein -
  C1S65_RS08185 (C1S65_08185) comA 1723850..1726072 (+) 2223 WP_112897748.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C1S65_RS08190 (C1S65_08190) exbB 1726183..1726818 (+) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C1S65_RS08195 (C1S65_08195) - 1726815..1727249 (+) 435 WP_054893058.1 biopolymer transporter ExbD -
  C1S65_RS08200 (C1S65_08200) lpxK 1727249..1728244 (+) 996 WP_054893059.1 tetraacyldisaccharide 4'-kinase -
  C1S65_RS08205 (C1S65_08205) - 1728286..1728471 (+) 186 WP_054893060.1 Trm112 family protein -
  C1S65_RS08210 (C1S65_08210) kdsB 1728468..1729232 (+) 765 WP_054893061.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C1S65_RS08215 (C1S65_08215) - 1729232..1729696 (+) 465 WP_063543821.1 low molecular weight protein-tyrosine-phosphatase -
  C1S65_RS08220 (C1S65_08220) murB 1729693..1730712 (+) 1020 WP_112897749.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80639.75 Da        Isoelectric Point: 11.3050

>NTDB_id=301250 C1S65_RS08185 WP_112897748.1 1723850..1726072(+) (comA) [Pseudomonas putida strain NX-1]
MRTGMSALALGLLSLGLLPALPSVGWLFLLFLSALMCLFTRVWPIGWFLLGLSWACWSAQQALDDRLIAELDGRTLWLEG
RVTGLATQSGRSVRFELDEAQSRRAKLPRRMQLSWFDGPMVRTGERWRLAVNLRRPHGLLNPHGPDREAMLLARRIGATG
TVRAGEMLAPASGGWRDRLRQRLLAVDAQGREVVLAALVLGDGSGLAREDWQALQATGTVHLMVISGQHIGLLAGLIYGL
VAGLARLGAWPGRLPWLPWACGLAMAAALAYGALAGFQVPVQRACLMLATALIWRLRFRHLGAFFPLLLALVGVLLFEPL
ASLMPGFWLSFAAVAVLIYCFSARLGGWRPWQAWSRAQWVIAIGLLPAMLALGLPVSLSAPLVNLLAVPWISLAVLPLAL
LGTATLPLAGVGESLLWLAGGLIDLMFRALGLLAEWRPPWTPPPLSLWAWTLVCAGALLLLLPRGVPLRGLGAVMLLALW
APREQVPHAEVEVWQLDVGQGLAVLLRTRHHSLLYDAGPAMGTSDLGQTVVLPTLRRLGVNQLDLMLISHAHADHAGGAL
AVQRGLPVARVLAGKARELPAVLGAQVCSSGERWEWDGVMFSLWHWPSGKNSNDRSCVLLVEAQGERLLLAGDMEAGAER
AWLESADAARIDWLQSPHHGSRSSSTEPFIRAIAPRGVMISRGRHNGFGHPHPQVVERYRRHGLAVHDTALQGALRLRLG
RHGEVEGLRAQRRFWREPPS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=301250 C1S65_RS08185 WP_112897748.1 1723850..1726072(+) (comA) [Pseudomonas putida strain NX-1]
ATGCGCACAGGGATGTCTGCGCTGGCGCTCGGGTTGTTGAGCCTGGGTCTCTTGCCTGCCTTGCCGTCGGTCGGATGGCT
GTTCCTTCTGTTCTTGTCGGCACTGATGTGCCTGTTCACTCGCGTCTGGCCGATAGGGTGGTTCCTGCTGGGGCTGAGCT
GGGCCTGCTGGTCGGCCCAGCAGGCCCTTGATGATCGCCTGATCGCCGAGCTCGATGGGCGCACACTGTGGCTGGAGGGC
AGGGTGACGGGGCTGGCGACGCAGTCCGGGCGCAGCGTGCGTTTCGAGCTGGACGAGGCACAGTCCCGGCGTGCGAAGTT
ACCCCGCCGGATGCAACTGAGCTGGTTCGACGGCCCCATGGTCCGGACTGGCGAGCGCTGGCGGCTCGCGGTCAACCTCA
GACGCCCTCATGGGCTGCTCAACCCCCATGGTCCCGACCGCGAAGCGATGCTGCTGGCACGGCGCATTGGTGCCACAGGA
ACGGTCAGGGCCGGGGAGATGCTGGCCCCGGCGAGCGGGGGCTGGCGCGACAGGCTGCGCCAGCGCTTGCTGGCGGTGGA
CGCCCAAGGGCGGGAGGTGGTGCTGGCGGCGCTGGTGCTCGGTGACGGTTCTGGGCTGGCGCGGGAGGACTGGCAGGCCT
TGCAGGCGACCGGCACCGTGCACCTGATGGTGATTTCGGGGCAGCACATTGGCTTGCTGGCGGGGCTGATCTATGGGCTG
GTTGCCGGACTGGCCCGTCTGGGTGCCTGGCCAGGGAGGCTACCGTGGTTGCCCTGGGCGTGCGGCCTGGCGATGGCAGC
AGCCTTGGCCTATGGCGCCCTGGCTGGCTTTCAGGTGCCGGTGCAGCGTGCATGCCTGATGCTGGCCACTGCCTTGATCT
GGCGTCTGCGCTTTCGTCATCTGGGGGCGTTCTTCCCCTTGTTGCTGGCTTTGGTAGGTGTATTGCTGTTCGAGCCCCTG
GCCAGCCTGATGCCGGGCTTCTGGCTGTCTTTCGCGGCGGTGGCAGTGCTGATCTACTGCTTCAGCGCGCGTCTGGGTGG
CTGGCGGCCCTGGCAGGCCTGGAGTCGTGCTCAATGGGTGATCGCCATTGGTTTGCTGCCCGCGATGCTGGCGCTGGGTC
TGCCTGTCAGCCTCAGCGCGCCGTTGGTCAATCTCCTGGCAGTACCCTGGATCAGCCTGGCGGTGTTGCCATTGGCCCTG
CTCGGAACGGCGACGCTGCCGTTGGCAGGGGTGGGGGAATCGTTGCTGTGGCTGGCGGGTGGGTTGATCGACCTGATGTT
TCGCGCGCTCGGCCTGCTGGCCGAATGGCGTCCACCCTGGACGCCCCCGCCGCTTTCGCTGTGGGCGTGGACGCTGGTGT
GTGCGGGCGCGTTGCTGCTCTTGCTGCCACGCGGCGTGCCGCTGCGAGGACTGGGGGCGGTGATGCTGCTGGCGCTGTGG
GCGCCTCGCGAGCAGGTGCCGCACGCAGAGGTGGAAGTCTGGCAACTGGACGTTGGCCAAGGCTTGGCGGTGCTGTTGCG
CACGCGGCATCACAGCCTGCTTTACGATGCCGGGCCGGCGATGGGCACCAGTGACCTTGGGCAGACCGTGGTGCTGCCGA
CCTTGCGCAGGCTGGGTGTCAACCAGCTCGATCTGATGCTGATCAGCCATGCACATGCCGACCACGCCGGCGGCGCTCTC
GCCGTGCAGCGCGGCCTGCCGGTGGCGCGGGTGCTGGCTGGCAAGGCTCGGGAGTTGCCCGCAGTCTTGGGCGCACAGGT
GTGCAGCAGTGGTGAGCGCTGGGAGTGGGATGGCGTGATGTTCTCGCTGTGGCACTGGCCCAGTGGCAAGAACAGCAACG
ACCGCTCCTGTGTGCTGCTGGTCGAGGCCCAAGGGGAGCGCTTGCTGCTGGCTGGTGACATGGAGGCCGGTGCCGAGCGT
GCCTGGCTGGAGTCCGCCGATGCGGCGCGTATCGACTGGCTGCAGTCCCCGCATCATGGCAGCCGCAGTTCCTCCACCGA
GCCTTTCATCCGCGCCATCGCGCCGCGTGGCGTGATGATTTCCCGTGGGCGACACAATGGTTTCGGTCACCCGCACCCGC
AGGTGGTCGAACGCTATCGGCGGCATGGGCTGGCAGTGCATGACACGGCACTGCAAGGGGCGCTGCGCCTGCGACTGGGC
AGGCACGGAGAGGTCGAGGGGTTGCGTGCGCAGCGGCGCTTCTGGCGTGAGCCGCCTTCCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.162

0.581
  comA Ralstonia pseudosolanacearum GMI1000

34.896

100

0.362

Multiple sequence alignment