Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ETT69_RS06245 Genome accession   NZ_CP035430
Coordinates   1210848..1211444 (-) Length   198 a.a.
NCBI ID   WP_032465090.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1205848..1216444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT69_RS06230 (ETT69_06220) - 1207339..1208034 (-) 696 WP_002983946.1 TIGR02206 family membrane protein -
  ETT69_RS06235 (ETT69_06225) murF 1208114..1209505 (-) 1392 WP_010922441.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  ETT69_RS06240 (ETT69_06230) - 1209701..1210747 (-) 1047 WP_023610118.1 D-alanine--D-alanine ligase -
  ETT69_RS06245 (ETT69_06235) recR 1210848..1211444 (-) 597 WP_032465090.1 recombination mediator RecR Machinery gene
  ETT69_RS10150 (ETT69_06240) - 1211491..1211682 (-) 192 WP_002983936.1 hypothetical protein -
  ETT69_RS06255 (ETT69_06245) - 1212243..1213022 (-) 780 WP_014407680.1 formate/nitrite transporter family protein -
  ETT69_RS06260 (ETT69_06250) - 1213146..1213688 (-) 543 WP_011017959.1 hypothetical protein -
  ETT69_RS06265 (ETT69_06255) - 1213849..1214370 (-) 522 WP_002983930.1 transcription repressor NadR -
  ETT69_RS06270 (ETT69_06260) - 1214477..1215172 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  ETT69_RS06275 (ETT69_06265) - 1215411..1216346 (+) 936 WP_136019205.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21656.84 Da        Isoelectric Point: 4.8853

>NTDB_id=301200 ETT69_RS06245 WP_032465090.1 1210848..1211444(-) (recR) [Streptococcus pyogenes strain emm55]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLIIRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=301200 ETT69_RS06245 WP_032465090.1 1210848..1211444(-) (recR) [Streptococcus pyogenes strain emm55]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAACTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGTCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTATCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5