Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABAYE_RS02115 Genome accession   NC_010410
Coordinates   339663..340481 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii AYE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334663..345481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABAYE_RS20150 - 335245..335375 (-) 131 Protein_296 hypothetical protein -
  ABAYE_RS02085 (ABAYE0311) rpoZ 335414..335692 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABAYE_RS02090 (ABAYE0312) gmk 335765..336394 (-) 630 WP_000015937.1 guanylate kinase -
  ABAYE_RS02095 (ABAYE0313) ispH 336517..337467 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABAYE_RS02100 (ABAYE0314) fimU 337637..338110 (+) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  ABAYE_RS02105 (ABAYE0315) pilV 338104..338664 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABAYE_RS02110 (ABAYE0316) pilW 338665..339666 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABAYE_RS02115 (ABAYE0317) pilX 339663..340481 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABAYE_RS02120 (ABAYE0318) pilY1 340493..344347 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  ABAYE_RS02125 (ABAYE0319) pilY2 344358..344840 (+) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABAYE_RS02130 (ABAYE0320) pilE 344837..345262 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=30119 ABAYE_RS02115 WP_000149374.1 339663..340481(+) (pilX) [Acinetobacter baumannii AYE]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=30119 ABAYE_RS02115 WP_000149374.1 339663..340481(+) (pilX) [Acinetobacter baumannii AYE]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment