Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ABAYE_RS02105 Genome accession   NC_010410
Coordinates   338104..338664 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii AYE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333104..343664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABAYE_RS20150 - 335245..335375 (-) 131 Protein_296 hypothetical protein -
  ABAYE_RS02085 (ABAYE0311) rpoZ 335414..335692 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABAYE_RS02090 (ABAYE0312) gmk 335765..336394 (-) 630 WP_000015937.1 guanylate kinase -
  ABAYE_RS02095 (ABAYE0313) ispH 336517..337467 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABAYE_RS02100 (ABAYE0314) fimU 337637..338110 (+) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  ABAYE_RS02105 (ABAYE0315) pilV 338104..338664 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABAYE_RS02110 (ABAYE0316) pilW 338665..339666 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABAYE_RS02115 (ABAYE0317) pilX 339663..340481 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=30117 ABAYE_RS02105 WP_002194578.1 338104..338664(+) (pilV) [Acinetobacter baumannii AYE]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=30117 ABAYE_RS02105 WP_002194578.1 338104..338664(+) (pilV) [Acinetobacter baumannii AYE]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGTTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414

Multiple sequence alignment