Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ETT70_RS09125 Genome accession   NZ_CP035429
Coordinates   1772252..1773358 (+) Length   368 a.a.
NCBI ID   WP_136117534.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emmNA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1767252..1778358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT70_RS09105 (ETT70_09095) hasA 1767930..1769189 (+) 1260 WP_011018340.1 hyaluronan synthase HasA -
  ETT70_RS09110 (ETT70_09100) hasB 1769225..1770433 (+) 1209 WP_136113978.1 UDP-glucose 6-dehydrogenase HasB -
  ETT70_RS09115 (ETT70_09110) hasC 1770615..1771529 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  ETT70_RS09120 (ETT70_09115) yaaA 1771837..1772250 (+) 414 WP_136275905.1 S4 domain-containing protein YaaA -
  ETT70_RS09125 (ETT70_09120) recF 1772252..1773358 (+) 1107 WP_136117534.1 DNA replication/repair protein RecF Machinery gene
  ETT70_RS09130 (ETT70_09125) - 1773415..1774278 (-) 864 WP_002992310.1 GRP family sugar transporter -
  ETT70_RS09135 (ETT70_09130) guaB 1774481..1775962 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  ETT70_RS09140 (ETT70_09135) trpS 1776240..1777262 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41809.74 Da        Isoelectric Point: 8.9557

>NTDB_id=301139 ETT70_RS09125 WP_136117534.1 1772252..1773358(+) (recF) [Streptococcus pyogenes strain emmNA]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFNHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=301139 ETT70_RS09125 WP_136117534.1 1772252..1773358(+) (recF) [Streptococcus pyogenes strain emmNA]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTAATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAATT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.187

100

0.459