Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ETT71_RS09060 Genome accession   NZ_CP035428
Coordinates   1800123..1801229 (+) Length   368 a.a.
NCBI ID   WP_111695062.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emmSTG866.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795123..1806229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT71_RS09040 (ETT71_09035) hasA 1795801..1797060 (+) 1260 WP_021775371.1 hyaluronan synthase HasA -
  ETT71_RS09045 (ETT71_09040) hasB 1797096..1798304 (+) 1209 WP_063812386.1 UDP-glucose 6-dehydrogenase HasB -
  ETT71_RS09050 (ETT71_09050) hasC 1798486..1799400 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  ETT71_RS09055 (ETT71_09055) yaaA 1799708..1800133 (+) 426 WP_136093518.1 S4 domain-containing protein YaaA -
  ETT71_RS09060 (ETT71_09060) recF 1800123..1801229 (+) 1107 WP_111695062.1 DNA replication/repair protein RecF Machinery gene
  ETT71_RS09065 (ETT71_09065) - 1801285..1802148 (-) 864 WP_002991450.1 GRP family sugar transporter -
  ETT71_RS09070 (ETT71_09070) guaB 1802351..1803832 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  ETT71_RS09075 (ETT71_09075) trpS 1804110..1805132 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41794.77 Da        Isoelectric Point: 8.9503

>NTDB_id=301042 ETT71_RS09060 WP_111695062.1 1800123..1801229(+) (recF) [Streptococcus pyogenes strain emmSTG866.1]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLKKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=301042 ETT71_RS09060 WP_111695062.1 1800123..1801229(+) (recF) [Streptococcus pyogenes strain emmSTG866.1]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTAAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465