Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ETT72_RS06115 Genome accession   NZ_CP035427
Coordinates   1179144..1179740 (-) Length   198 a.a.
NCBI ID   WP_032464441.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1174144..1184740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT72_RS06100 (ETT72_06095) - 1175632..1176327 (-) 696 WP_002994365.1 TIGR02206 family membrane protein -
  ETT72_RS06105 (ETT72_06100) murF 1176431..1177798 (-) 1368 WP_032464437.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  ETT72_RS06110 (ETT72_06105) - 1177997..1179043 (-) 1047 WP_032464439.1 D-alanine--D-alanine ligase -
  ETT72_RS06115 (ETT72_06110) recR 1179144..1179740 (-) 597 WP_032464441.1 recombination mediator RecR Machinery gene
  ETT72_RS09930 (ETT72_06115) - 1179787..1179978 (-) 192 WP_032464443.1 hypothetical protein -
  ETT72_RS06125 (ETT72_06120) - 1180538..1181317 (-) 780 WP_014407680.1 formate/nitrite transporter family protein -
  ETT72_RS06130 (ETT72_06125) - 1181441..1181983 (-) 543 WP_011017959.1 hypothetical protein -
  ETT72_RS06135 (ETT72_06130) - 1182144..1182665 (-) 522 WP_002983930.1 transcription repressor NadR -
  ETT72_RS06140 (ETT72_06135) - 1182772..1183467 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  ETT72_RS06145 (ETT72_06140) - 1183706..1184641 (+) 936 WP_002989136.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21614.76 Da        Isoelectric Point: 4.8853

>NTDB_id=300910 ETT72_RS06115 WP_032464441.1 1179144..1179740(-) (recR) [Streptococcus pyogenes strain emm74]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
AILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=300910 ETT72_RS06115 WP_032464441.1 1179144..1179740(-) (recR) [Streptococcus pyogenes strain emm74]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAACTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
GCCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495

Multiple sequence alignment