Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CSC39_RS15865 Genome accession   NZ_CP030331
Coordinates   2891729..2892358 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_452     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2886729..2897358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC39_RS15850 (CSC39_2867) helD 2886971..2889025 (-) 2055 WP_000420536.1 DNA helicase IV -
  CSC39_RS15855 (CSC39_2868) yccF 2889148..2889594 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CSC39_RS15860 (CSC39_2869) yccS 2889604..2891766 (+) 2163 WP_000875020.1 YccS family putative transporter -
  CSC39_RS15865 (CSC39_2870) sxy/tfoX 2891729..2892358 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CSC39_RS15870 (CSC39_2871) sulA 2892577..2893086 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CSC39_RS15880 (CSC39_2873) ompA 2893443..2894483 (+) 1041 WP_000750416.1 porin OmpA -
  CSC39_RS15885 (CSC39_2874) matP 2894559..2895011 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CSC39_RS15890 (CSC39_2875) ycbZ 2895197..2896957 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=300910 CSC39_RS15865 WP_000839153.1 2891729..2892358(-) (sxy/tfoX) [Escherichia coli strain AR_452]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=300910 CSC39_RS15865 WP_000839153.1 2891729..2892358(-) (sxy/tfoX) [Escherichia coli strain AR_452]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment