Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CSC60_RS13915 Genome accession   NZ_CP030323
Coordinates   2731496..2732065 (-) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain AR_475     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2726496..2737065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC60_RS13870 (CSC60_2564) - 2726970..2727578 (-) 609 WP_000020296.1 class I SAM-dependent methyltransferase -
  CSC60_RS13875 (CSC60_2565) rplL 2727753..2728121 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  CSC60_RS13880 (CSC60_2566) rplJ 2728164..2728664 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  CSC60_RS13890 (CSC60_2567) rplA 2728936..2729628 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  CSC60_RS13895 (CSC60_2568) rplK 2729836..2730258 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  CSC60_RS13900 (CSC60_2569) nusG 2730439..2730987 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  CSC60_RS13905 (CSC60_2570) secE 2731000..2731182 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  CSC60_RS13910 (CSC60_2571) rpmG 2731238..2731381 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  CSC60_RS13915 (CSC60_2572) sigH 2731496..2732065 (-) 570 WP_000872872.1 RNA polymerase sigma factor Regulator
  CSC60_RS13920 (CSC60_2573) - 2732146..2732670 (-) 525 WP_000664738.1 NYN domain-containing protein -
  CSC60_RS13925 (CSC60_2574) rlmB 2732670..2733416 (-) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CSC60_RS13930 (CSC60_2575) - 2733424..2733828 (-) 405 WP_000370186.1 Mini-ribonuclease 3 -
  CSC60_RS13935 (CSC60_2576) cysS 2733821..2735221 (-) 1401 WP_000631977.1 cysteine--tRNA ligase -
  CSC60_RS13940 (CSC60_2577) cysE 2735205..2735852 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=300816 CSC60_RS13915 WP_000872872.1 2731496..2732065(-) (sigH) [Staphylococcus aureus strain AR_475]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=300816 CSC60_RS13915 WP_000872872.1 2731496..2732065(-) (sigH) [Staphylococcus aureus strain AR_475]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment