Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CSC60_RS11765 Genome accession   NZ_CP030323
Coordinates   2313916..2314902 (-) Length   328 a.a.
NCBI ID   WP_112380517.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_475     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2308916..2319902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC60_RS11740 (CSC60_2171) - 2309176..2309523 (-) 348 WP_001242107.1 hypothetical protein -
  CSC60_RS11745 (CSC60_2172) - 2309709..2310302 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  CSC60_RS11750 (CSC60_2173) - 2310406..2310771 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  CSC60_RS11755 (CSC60_2174) yjbH 2310794..2311600 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  CSC60_RS11760 (CSC60_2175) pepF 2312060..2313868 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  CSC60_RS11765 (CSC60_2176) coiA 2313916..2314902 (-) 987 WP_112380517.1 competence protein CoiA family protein Machinery gene
  CSC60_RS11770 (CSC60_2177) mecA 2315023..2315742 (-) 720 WP_001217728.1 adaptor protein MecA -
  CSC60_RS11775 (CSC60_2178) spxA 2316113..2316508 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  CSC60_RS11780 (CSC60_2179) trpS 2316803..2317792 (+) 990 WP_000448937.1 tryptophan--tRNA ligase -
  CSC60_RS11785 (CSC60_2180) - 2317818..2319464 (-) 1647 WP_000277723.1 IS1182-like element ISSau3 family transposase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38731.24 Da        Isoelectric Point: 9.6529

>NTDB_id=300811 CSC60_RS11765 WP_112380517.1 2313916..2314902(-) (coiA) [Staphylococcus aureus strain AR_475]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLESDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=300811 CSC60_RS11765 WP_112380517.1 2313916..2314902(-) (coiA) [Staphylococcus aureus strain AR_475]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGAAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963

Multiple sequence alignment