Detailed information NTG0030080

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SP70585_RS11680
• Genome accession: NC_012468
• Coordinates: 2168662..2169759 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266669.1
• Uniprot ID: C1CBK4
• Organism: Streptococcus pneumoniae 70585
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2163662..2174759

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SP70585_RS11655 (SP70585_2349)	pgsA	2164183..2164728 (-)	546	WP_000712131.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SP70585_RS11660 (SP70585_2350)	rodZ	2164739..2165560 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
SP70585_RS11665 (SP70585_2351)	yfmH	2165602..2166885 (-)	1284	WP_000170208.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SP70585_RS11670 (SP70585_2352)	yfmF	2166882..2168132 (-)	1251	WP_000424275.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SP70585_RS11675 (SP70585_2353)	yaaA	2168291..2168659 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
SP70585_RS11680 (SP70585_2354)	recF	2168662..2169759 (+)	1098	WP_000266669.1	DNA replication/repair protein RecF	Machinery gene
SP70585_RS11685 (SP70585_2355)	guaB	2169810..2171288 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
SP70585_RS11690 (SP70585_2356)	trpS	2171440..2172465 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
SP70585_RS11695 (SP70585_2357)	-	2172671..2174293 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41960.00 Da
• Isoelectric Point: 8.6746

>NTDB_id=30080 SP70585_RS11680 WP_000266669.1 2168662..2169759(+) (recF) [Streptococcus pneumoniae 70585]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=30080 SP70585_RS11680 WP_000266669.1 2168662..2169759(+) (recF) [Streptococcus pneumoniae 70585]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: C1CBK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46