Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQ228_RS08635 Genome accession   NZ_CP030250
Coordinates   1685420..1685938 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus strain CS20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1680420..1690938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS08615 - 1682328..1683272 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  DQ228_RS08620 - 1683343..1684014 (+) 672 WP_011681622.1 DUF1129 domain-containing protein -
  DQ228_RS08625 - 1684131..1685012 (+) 882 WP_011681623.1 DUF4300 family protein -
  DQ228_RS08630 rpsR 1685139..1685378 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  DQ228_RS08635 ssb 1685420..1685938 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  DQ228_RS08640 rpsF 1685950..1686240 (-) 291 WP_011681624.1 30S ribosomal protein S6 -
  DQ228_RS08645 - 1686459..1687412 (+) 954 WP_138496448.1 hypothetical protein -
  DQ228_RS08650 mutY 1688198..1689349 (+) 1152 WP_011681626.1 A/G-specific adenine glycosylase -
  DQ228_RS08655 - 1689676..1689927 (-) 252 WP_011226551.1 hypothetical protein -
  DQ228_RS08660 - 1690030..1690257 (-) 228 WP_011681629.1 hypothetical protein -
  DQ228_RS08665 - 1690244..1690558 (-) 315 WP_014608696.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=300445 DQ228_RS08635 WP_002951905.1 1685420..1685938(-) (ssb) [Streptococcus thermophilus strain CS20]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=300445 DQ228_RS08635 WP_002951905.1 1685420..1685938(-) (ssb) [Streptococcus thermophilus strain CS20]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment