Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SP70585_RS09640 Genome accession   NC_012468
Coordinates   1801167..1801877 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae 70585     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796167..1806877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP70585_RS09620 (SP70585_1937) - 1796708..1796956 (-) 249 WP_000364990.1 YneF family protein -
  SP70585_RS09630 (SP70585_1938) treC 1797212..1798837 (-) 1626 WP_000171226.1 alpha,alpha-phosphotrehalase -
  SP70585_RS09635 (SP70585_1939) treP 1799015..1800982 (-) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  SP70585_RS09640 (SP70585_1940) treR 1801167..1801877 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SP70585_RS12830 - 1802033..1803318 (+) 1286 WP_408672784.1 ISL3 family transposase -
  SP70585_RS12835 - 1803417..1804723 (+) 1307 Protein_1848 transposase -
  SP70585_RS09665 (SP70585_1945) - 1804857..1805783 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  SP70585_RS09670 (SP70585_1946) amiE 1805794..1806861 (-) 1068 WP_000159558.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=30044 SP70585_RS09640 WP_000760673.1 1801167..1801877(+) (treR) [Streptococcus pneumoniae 70585]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=30044 SP70585_RS09640 WP_000760673.1 1801167..1801877(+) (treR) [Streptococcus pneumoniae 70585]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment