Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   DQW72_RS08990 Genome accession   NZ_CP030246
Coordinates   1850710..1851285 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CSF41498     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1845710..1856285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQW72_RS08940 (DQW72_08915) - 1846087..1846281 (-) 195 WP_002491611.1 DUF1270 family protein -
  DQW72_RS08950 (DQW72_08925) - 1846766..1847074 (-) 309 WP_002501703.1 DUF771 domain-containing protein -
  DQW72_RS08955 (DQW72_08930) - 1847128..1847319 (-) 192 WP_002501702.1 helix-turn-helix transcriptional regulator -
  DQW72_RS08960 (DQW72_08935) - 1847480..1847815 (+) 336 WP_002446811.1 helix-turn-helix domain-containing protein -
  DQW72_RS08965 (DQW72_08940) - 1847971..1848345 (+) 375 WP_002501701.1 hypothetical protein -
  DQW72_RS08970 (DQW72_08945) - 1848358..1849032 (+) 675 WP_049392317.1 Ltp family lipoprotein -
  DQW72_RS08975 (DQW72_08950) - 1849109..1850173 (+) 1065 WP_002491600.1 site-specific integrase -
  DQW72_RS08990 (DQW72_08965) comK/comK1 1850710..1851285 (-) 576 WP_001829272.1 competence protein ComK Regulator
  DQW72_RS09000 (DQW72_08975) - 1851500..1851718 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  DQW72_RS09005 (DQW72_08980) - 1851796..1852782 (-) 987 WP_001829269.1 lipoate--protein ligase -
  DQW72_RS09010 (DQW72_08985) - 1852987..1853172 (+) 186 WP_001829339.1 YkvS family protein -
  DQW72_RS09015 (DQW72_08990) - 1853178..1853780 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  DQW72_RS09020 (DQW72_08995) - 1853883..1855388 (-) 1506 WP_001829277.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=300390 DQW72_RS08990 WP_001829272.1 1850710..1851285(-) (comK/comK1) [Staphylococcus epidermidis strain CSF41498]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=300390 DQW72_RS08990 WP_001829272.1 1850710..1851285(-) (comK/comK1) [Staphylococcus epidermidis strain CSF41498]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment