Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | DQW72_RS07740 | Genome accession | NZ_CP030246 |
| Coordinates | 1604388..1605260 (-) | Length | 290 a.a. |
| NCBI ID | WP_002484839.1 | Uniprot ID | A0A4Y7VXK4 |
| Organism | Staphylococcus epidermidis strain CSF41498 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1565928..1636802 | 1604388..1605260 | within | 0 |
Gene organization within MGE regions
Location: 1565928..1636802
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQW72_RS07595 (DQW72_07570) | yfmF | 1566968..1568239 (-) | 1272 | WP_002439538.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| DQW72_RS07600 (DQW72_07575) | - | 1568270..1568983 (-) | 714 | WP_002439536.1 | GntR family transcriptional regulator | - |
| DQW72_RS07605 (DQW72_07580) | - | 1568986..1571379 (-) | 2394 | WP_049392165.1 | DNA translocase FtsK | - |
| DQW72_RS07610 (DQW72_07585) | rnjB | 1571645..1573318 (-) | 1674 | WP_002457357.1 | ribonuclease J2 | - |
| DQW72_RS07615 (DQW72_07590) | pnp | 1573686..1575791 (-) | 2106 | WP_001832554.1 | polyribonucleotide nucleotidyltransferase | - |
| DQW72_RS07620 (DQW72_07595) | rpsO | 1575923..1576192 (-) | 270 | WP_002439528.1 | 30S ribosomal protein S15 | - |
| DQW72_RS07625 (DQW72_07600) | - | 1576312..1577283 (-) | 972 | WP_001832563.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| DQW72_RS07630 (DQW72_07605) | truB | 1577299..1578216 (-) | 918 | WP_002456563.1 | tRNA pseudouridine(55) synthase TruB | - |
| DQW72_RS07635 (DQW72_07610) | rbfA | 1578354..1578704 (-) | 351 | WP_001829509.1 | 30S ribosome-binding factor RbfA | - |
| DQW72_RS07640 (DQW72_07615) | infB | 1579007..1581169 (-) | 2163 | WP_002468903.1 | translation initiation factor IF-2 | - |
| DQW72_RS07645 (DQW72_07620) | - | 1581174..1581491 (-) | 318 | WP_002439520.1 | YlxQ family RNA-binding protein | - |
| DQW72_RS07650 (DQW72_07625) | rnpM | 1581491..1581775 (-) | 285 | WP_001829465.1 | RNase P modulator RnpM | - |
| DQW72_RS07655 (DQW72_07630) | nusA | 1581793..1583016 (-) | 1224 | WP_002456565.1 | transcription termination factor NusA | - |
| DQW72_RS07660 (DQW72_07635) | rimP | 1583037..1583504 (-) | 468 | WP_002439519.1 | ribosome maturation factor RimP | - |
| DQW72_RS07665 (DQW72_07640) | - | 1583683..1587993 (-) | 4311 | WP_002456566.1 | PolC-type DNA polymerase III | - |
| DQW72_RS07670 (DQW72_07645) | - | 1588243..1589946 (-) | 1704 | WP_001829513.1 | proline--tRNA ligase | - |
| DQW72_RS07675 (DQW72_07650) | rseP | 1589965..1591251 (-) | 1287 | WP_001829501.1 | RIP metalloprotease RseP | - |
| DQW72_RS07680 (DQW72_07655) | - | 1591485..1592267 (-) | 783 | WP_001829499.1 | phosphatidate cytidylyltransferase | - |
| DQW72_RS07685 (DQW72_07660) | - | 1592271..1593041 (-) | 771 | WP_001832561.1 | isoprenyl transferase | - |
| DQW72_RS07690 (DQW72_07665) | frr | 1593262..1593816 (-) | 555 | WP_001829472.1 | ribosome recycling factor | - |
| DQW72_RS07695 (DQW72_07670) | pyrH | 1593833..1594555 (-) | 723 | WP_002439511.1 | UMP kinase | - |
| DQW72_RS07700 (DQW72_07675) | tsf | 1594696..1595574 (-) | 879 | WP_002439509.1 | translation elongation factor Ts | - |
| DQW72_RS07705 (DQW72_07680) | rpsB | 1595726..1596514 (-) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
| DQW72_RS07710 (DQW72_07685) | codY | 1596877..1597647 (-) | 771 | WP_002439506.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| DQW72_RS07715 (DQW72_07690) | hslU | 1597671..1599074 (-) | 1404 | WP_001829474.1 | ATP-dependent protease ATPase subunit HslU | - |
| DQW72_RS07720 (DQW72_07695) | hslV | 1599143..1599685 (-) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| DQW72_RS07725 (DQW72_07700) | xerC | 1599689..1600549 (-) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| DQW72_RS07730 (DQW72_07705) | trmFO | 1600804..1602111 (-) | 1308 | WP_114064936.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| DQW72_RS07735 (DQW72_07710) | topA | 1602136..1604205 (-) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| DQW72_RS07740 (DQW72_07715) | dprA | 1604388..1605260 (-) | 873 | WP_002484839.1 | DNA-processing protein DprA | Machinery gene |
| DQW72_RS07750 (DQW72_07725) | sucD | 1606065..1606973 (-) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| DQW72_RS07755 (DQW72_07730) | sucC | 1606995..1608161 (-) | 1167 | WP_002439496.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| DQW72_RS07760 (DQW72_07735) | - | 1608269..1609039 (-) | 771 | WP_001829514.1 | ribonuclease HII | - |
| DQW72_RS07765 (DQW72_07740) | ylqF | 1609044..1609907 (-) | 864 | WP_002468554.1 | ribosome biogenesis GTPase YlqF | - |
| DQW72_RS12945 (DQW72_07745) | - | 1609928..1610077 (-) | 150 | WP_162152279.1 | hypothetical protein | - |
| DQW72_RS07775 (DQW72_07750) | - | 1610236..1612836 (+) | 2601 | WP_010959172.1 | YfhO family protein | - |
| DQW72_RS07780 (DQW72_07755) | - | 1612829..1615432 (+) | 2604 | WP_020368058.1 | YfhO family protein | - |
| DQW72_RS07785 (DQW72_07760) | rplS | 1615962..1616312 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| DQW72_RS07790 (DQW72_07765) | trmD | 1616418..1617155 (-) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| DQW72_RS07795 (DQW72_07770) | rimM | 1617155..1617658 (-) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| DQW72_RS07800 (DQW72_07775) | rpsP | 1617785..1618060 (-) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| DQW72_RS07805 (DQW72_07780) | ffh | 1618368..1619735 (-) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| DQW72_RS07810 (DQW72_07785) | - | 1619766..1620098 (-) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| DQW72_RS07815 (DQW72_07790) | ftsY | 1620100..1621326 (-) | 1227 | WP_001830080.1 | signal recognition particle-docking protein FtsY | - |
| DQW72_RS07820 (DQW72_07795) | smc | 1621323..1624892 (-) | 3570 | WP_002502436.1 | chromosome segregation protein SMC | - |
| DQW72_RS07825 (DQW72_07800) | rnc | 1625019..1625756 (-) | 738 | WP_002470220.1 | ribonuclease III | - |
| DQW72_RS07830 (DQW72_07805) | - | 1625871..1626104 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| DQW72_RS07835 (DQW72_07810) | fabG | 1626331..1627065 (-) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| DQW72_RS07840 (DQW72_07815) | fabD | 1627058..1627984 (-) | 927 | WP_001830062.1 | ACP S-malonyltransferase | - |
| DQW72_RS07845 (DQW72_07820) | plsX | 1627986..1628963 (-) | 978 | WP_001830112.1 | phosphate acyltransferase PlsX | - |
| DQW72_RS07850 (DQW72_07825) | fapR | 1628965..1629525 (-) | 561 | WP_001830099.1 | transcription factor FapR | - |
| DQW72_RS07855 (DQW72_07830) | recG | 1629684..1631732 (-) | 2049 | WP_020368084.1 | ATP-dependent DNA helicase RecG | - |
| DQW72_RS07860 (DQW72_07835) | fakA | 1631936..1633594 (-) | 1659 | WP_002489351.1 | fatty acid kinase catalytic subunit FakA | - |
| DQW72_RS07865 (DQW72_07840) | - | 1633609..1633983 (-) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| DQW72_RS07870 (DQW72_07845) | rpmB | 1634341..1634529 (+) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| DQW72_RS07875 (DQW72_07850) | - | 1634612..1635247 (-) | 636 | WP_002489340.1 | thiamine diphosphokinase | - |
| DQW72_RS07880 (DQW72_07855) | rpe | 1635252..1635896 (-) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| DQW72_RS07885 (DQW72_07860) | rsgA | 1635897..1636772 (-) | 876 | WP_002456227.1 | ribosome small subunit-dependent GTPase A | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33717.61 Da Isoelectric Point: 9.3616
>NTDB_id=300389 DQW72_RS07740 WP_002484839.1 1604388..1605260(-) (dprA) [Staphylococcus epidermidis strain CSF41498]
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=300389 DQW72_RS07740 WP_002484839.1 1604388..1605260(-) (dprA) [Staphylococcus epidermidis strain CSF41498]
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |