Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQW72_RS04030 | Genome accession | NZ_CP030246 |
| Coordinates | 834467..834862 (+) | Length | 131 a.a. |
| NCBI ID | WP_002457121.1 | Uniprot ID | A0A7H5C5S7 |
| Organism | Staphylococcus epidermidis strain CSF41498 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 829467..839862
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQW72_RS04005 (DQW72_03980) | - | 830886..831290 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| DQW72_RS04010 (DQW72_03985) | - | 831439..831672 (+) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| DQW72_RS04015 (DQW72_03990) | murA | 831782..833047 (+) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| DQW72_RS04020 (DQW72_03995) | fabZ | 833081..833518 (+) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| DQW72_RS04025 (DQW72_04000) | - | 833836..834276 (-) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| DQW72_RS04030 (DQW72_04005) | ssb | 834467..834862 (+) | 396 | WP_002457121.1 | single-stranded DNA-binding protein | Machinery gene |
| DQW72_RS04035 (DQW72_04010) | - | 835250..835909 (+) | 660 | WP_001829904.1 | transglycosylase family protein | - |
| DQW72_RS04040 (DQW72_04015) | tenA | 836193..836882 (+) | 690 | WP_001829894.1 | thiaminase II | - |
| DQW72_RS04045 (DQW72_04020) | thiD | 836875..837696 (+) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| DQW72_RS04050 (DQW72_04025) | thiM | 837689..838477 (+) | 789 | WP_001829971.1 | hydroxyethylthiazole kinase | - |
| DQW72_RS04055 (DQW72_04030) | thiE | 838483..839121 (+) | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15159.02 Da Isoelectric Point: 5.2661
>NTDB_id=300371 DQW72_RS04030 WP_002457121.1 834467..834862(+) (ssb) [Staphylococcus epidermidis strain CSF41498]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=300371 DQW72_RS04030 WP_002457121.1 834467..834862(+) (ssb) [Staphylococcus epidermidis strain CSF41498]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |