Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SP70585_RS08495 Genome accession   NC_012468
Coordinates   1582721..1583317 (-) Length   198 a.a.
NCBI ID   WP_000966746.1    Uniprot ID   Q9R2M1
Organism   Streptococcus pneumoniae 70585     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1577721..1588317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP70585_RS08475 (SP70585_1708) - 1578652..1579356 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  SP70585_RS08480 (SP70585_1709) - 1579447..1580058 (-) 612 WP_000857980.1 NUDIX hydrolase -
  SP70585_RS08485 (SP70585_1710) murF 1580045..1581418 (-) 1374 WP_000778905.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SP70585_RS08490 (SP70585_1711) - 1581502..1582545 (-) 1044 WP_000814638.1 D-alanine--D-alanine ligase -
  SP70585_RS08495 (SP70585_1712) recR 1582721..1583317 (-) 597 WP_000966746.1 recombination mediator RecR Machinery gene
  SP70585_RS08500 (SP70585_1713) pbp2b 1583328..1585385 (-) 2058 WP_074192806.1 penicillin-binding protein 2B -
  SP70585_RS08505 (SP70585_1714) - 1585585..1586436 (+) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  SP70585_RS08510 (SP70585_1715) - 1586452..1587336 (-) 885 WP_000222983.1 ROK family protein -
  SP70585_RS08515 (SP70585_1716) - 1587354..1588271 (-) 918 WP_001281525.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21678.82 Da        Isoelectric Point: 4.5622

>NTDB_id=30037 SP70585_RS08495 WP_000966746.1 1582721..1583317(-) (recR) [Streptococcus pneumoniae 70585]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDSTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=30037 SP70585_RS08495 WP_000966746.1 1582721..1583317(-) (recR) [Streptococcus pneumoniae 70585]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATTCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
GCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTTAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACCTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9R2M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48

Multiple sequence alignment