Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   DQW72_RS01525 Genome accession   NZ_CP030246
Coordinates   337679..338575 (+) Length   298 a.a.
NCBI ID   WP_002468753.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CSF41498     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 332679..343575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQW72_RS01505 (DQW72_01480) - 333365..334909 (+) 1545 WP_049392296.1 NAD(P)H-binding protein -
  DQW72_RS01510 (DQW72_01485) - 335032..336501 (-) 1470 WP_002456720.1 alkaline phosphatase -
  DQW72_RS01515 (DQW72_01490) - 336798..336977 (+) 180 WP_002456719.1 hypothetical protein -
  DQW72_RS01520 (DQW72_01495) braR 337008..337673 (+) 666 WP_001830679.1 response regulator transcription factor Regulator
  DQW72_RS01525 (DQW72_01500) braS 337679..338575 (+) 897 WP_002468753.1 sensor histidine kinase Regulator
  DQW72_RS01530 (DQW72_01505) - 338686..339435 (+) 750 WP_049392297.1 ABC transporter ATP-binding protein -
  DQW72_RS01535 (DQW72_01510) - 339437..341449 (+) 2013 WP_049392300.1 ABC transporter permease -
  DQW72_RS01540 (DQW72_01515) - 341553..342143 (+) 591 WP_049392302.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34874.50 Da        Isoelectric Point: 6.7743

>NTDB_id=300367 DQW72_RS01525 WP_002468753.1 337679..338575(+) (braS) [Staphylococcus epidermidis strain CSF41498]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDAQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=300367 DQW72_RS01525 WP_002468753.1 337679..338575(+) (braS) [Staphylococcus epidermidis strain CSF41498]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTGTTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAATGAACATCTTAAAGATAAAGTAGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGTCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
TATTTTAACCGATGCACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATTTGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTCTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597

Multiple sequence alignment