Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHE29_RS09530 Genome accession   NZ_CP030180
Coordinates   1901163..1901768 (+) Length   201 a.a.
NCBI ID   WP_053530142.1    Uniprot ID   -
Organism   Salmonella enterica strain SA20100201     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1896163..1906768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHE29_RS09510 (CHE29_09500) - 1896558..1898318 (-) 1761 WP_053509640.1 Lon protease family protein -
  CHE29_RS09515 (CHE29_09505) matP 1898504..1898956 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHE29_RS09520 (CHE29_09510) ompA 1899028..1900080 (-) 1053 WP_114049260.1 porin OmpA -
  CHE29_RS09525 (CHE29_09515) sulA 1900437..1900946 (-) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  CHE29_RS09530 (CHE29_09520) sxy/tfoX 1901163..1901768 (+) 606 WP_053530142.1 TfoX/Sxy family DNA transformation protein Regulator
  CHE29_RS09535 (CHE29_09525) yccS 1901755..1903908 (-) 2154 WP_023247033.1 YccS family putative transporter -
  CHE29_RS09540 (CHE29_09530) - 1903927..1904373 (-) 447 WP_001261216.1 YccF domain-containing protein -
  CHE29_RS09545 (CHE29_09535) helD 1904497..1906551 (+) 2055 WP_079796449.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23129.84 Da        Isoelectric Point: 9.0103

>NTDB_id=299917 CHE29_RS09530 WP_053530142.1 1901163..1901768(+) (sxy/tfoX) [Salmonella enterica strain SA20100201]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIAGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=299917 CHE29_RS09530 WP_053530142.1 1901163..1901768(+) (sxy/tfoX) [Salmonella enterica strain SA20100201]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGACGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGCTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761

Multiple sequence alignment