Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ETA15_RS05650 Genome accession   NZ_CP035403
Coordinates   1073081..1073728 (+) Length   215 a.a.
NCBI ID   WP_041335631.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068081..1078728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS05635 (ETA15_05635) glpD 1068255..1069922 (+) 1668 WP_015715569.1 glycerol-3-phosphate dehydrogenase -
  ETA15_RS05640 (ETA15_05640) pgcA 1070052..1071797 (+) 1746 WP_129093306.1 phosphoglucomutase -
  ETA15_RS05645 (ETA15_05645) yhcY 1071945..1073084 (+) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  ETA15_RS05650 (ETA15_05650) vraR 1073081..1073728 (+) 648 WP_041335631.1 two-component system response regulator YhcZ Regulator
  ETA15_RS05655 (ETA15_05655) yhdA 1073725..1074249 (+) 525 WP_041052796.1 FMN-dependent NADPH-azoreductase -
  ETA15_RS05660 (ETA15_05660) yhdB 1074264..1074506 (-) 243 WP_003233373.1 YhdB family protein -
  ETA15_RS05665 (ETA15_05665) yhdC 1074707..1075030 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  ETA15_RS05670 (ETA15_05670) lytF 1075072..1076502 (-) 1431 WP_129093307.1 peptidoglycan endopeptidase LytF -
  ETA15_RS05675 (ETA15_05675) nsrR 1076654..1077094 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24135.75 Da        Isoelectric Point: 6.3034

>NTDB_id=299747 ETA15_RS05650 WP_041335631.1 1073081..1073728(+) (vraR) [Bacillus subtilis strain SRCM103581]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=299747 ETA15_RS05650 WP_041335631.1 1073081..1073728(+) (vraR) [Bacillus subtilis strain SRCM103581]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409

Multiple sequence alignment