Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   BVDSYZ_RS16585 Genome accession   NZ_CP030150
Coordinates   3297895..3298881 (-) Length   328 a.a.
NCBI ID   WP_269195024.1    Uniprot ID   -
Organism   Bacillus velezensis strain DSYZ     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3292895..3303881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVDSYZ_RS16550 (BVDSYZ_16550) - 3293151..3293627 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  BVDSYZ_RS16555 (BVDSYZ_16555) - 3293627..3293911 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BVDSYZ_RS16560 (BVDSYZ_16560) mnhG 3293895..3294269 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BVDSYZ_RS16565 (BVDSYZ_16565) - 3294309..3294692 (-) 384 WP_040238946.1 hotdog fold thioesterase -
  BVDSYZ_RS16570 (BVDSYZ_16570) comA 3294714..3295358 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BVDSYZ_RS16575 (BVDSYZ_16575) comP 3295439..3297742 (-) 2304 WP_040238945.1 histidine kinase Regulator
  BVDSYZ_RS16580 (BVDSYZ_16580) comX 3297762..3297941 (-) 180 WP_306383677.1 competence pheromone ComX -
  BVDSYZ_RS16585 (BVDSYZ_16585) comQ 3297895..3298881 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  BVDSYZ_RS16590 (BVDSYZ_16590) degQ 3299012..3299152 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BVDSYZ_RS16600 (BVDSYZ_16600) - 3299615..3299956 (+) 342 WP_015418107.1 hypothetical protein -
  BVDSYZ_RS16605 (BVDSYZ_16605) - 3299963..3301186 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  BVDSYZ_RS16610 (BVDSYZ_16610) - 3301316..3302782 (-) 1467 WP_015418109.1 nicotinate phosphoribosyltransferase -
  BVDSYZ_RS16615 (BVDSYZ_16615) - 3302800..3303351 (-) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  BVDSYZ_RS16620 (BVDSYZ_16620) - 3303448..3303846 (-) 399 WP_003152031.1 DUF1694 domain-containing protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 37726.29 Da        Isoelectric Point: 5.4671

>NTDB_id=299736 BVDSYZ_RS16585 WP_269195024.1 3297895..3298881(-) (comQ) [Bacillus velezensis strain DSYZ]
MKTIIEQICLDANQIKNRMKSIIERNIFNEHLMQLLLSFIEPKKNFSLAESAVLHYVIFDGENQETAVNLGAAIEILTLT
SDIIDDLEDEDNRDAPWMKIDRSLALSAAFSLYTAGLQSINSISTNPLVIKYVLKYIQDAMQGQHDDLINKPKTEDECLE
VIKLKCGSLFALANVTGTLLATGEFNKSVESYSYYKGIFEQISGDYHAIFKDNTSDILKDKHTLINLYLKRLFNKSSQEL
LCIFSDQKLYSQLRLNKKEFIQKLYDSGASQYVSVLYQLYMHKCETEVENLNLDIKKIKIIKKHLLNNKNNKKDDEDAEF
NKLFFELS

Nucleotide


Download         Length: 987 bp        

>NTDB_id=299736 BVDSYZ_RS16585 WP_269195024.1 3297895..3298881(-) (comQ) [Bacillus velezensis strain DSYZ]
GTGAAGACAATTATTGAGCAAATATGTTTAGATGCCAACCAAATCAAGAATAGAATGAAGAGTATAATAGAGCGGAACAT
ATTTAATGAACATCTAATGCAGCTCCTTCTCAGTTTTATTGAACCAAAAAAAAATTTTTCTCTAGCTGAATCAGCTGTTT
TGCATTATGTGATCTTTGACGGCGAAAATCAAGAAACCGCAGTGAACTTAGGTGCCGCTATTGAAATTCTTACACTTACT
TCCGATATAATTGATGATCTGGAAGATGAGGATAATCGAGATGCTCCTTGGATGAAGATAGATCGTTCACTAGCATTAAG
TGCAGCATTTTCATTATACACAGCAGGATTGCAAAGCATTAATTCGATTAGTACGAATCCTTTAGTGATTAAGTATGTAT
TAAAATATATTCAAGATGCAATGCAGGGTCAACATGATGATTTGATCAATAAACCAAAGACAGAAGATGAATGTTTAGAG
GTAATCAAGTTAAAATGCGGAAGTTTATTTGCGTTAGCAAATGTTACTGGTACGCTTTTAGCAACTGGAGAATTCAATAA
ATCTGTTGAAAGTTATTCCTATTATAAAGGGATATTTGAACAAATTTCCGGCGATTATCATGCTATTTTTAAGGATAATA
CTAGTGATATTCTGAAAGATAAACATACATTGATTAATTTATATCTTAAGCGCTTGTTTAATAAGTCTTCTCAAGAATTG
CTTTGTATATTCTCAGATCAAAAATTATATTCGCAACTGCGGCTTAATAAAAAAGAGTTTATCCAAAAGCTGTATGATTC
TGGAGCATCTCAATATGTTTCGGTTTTATACCAACTATACATGCATAAGTGTGAAACTGAAGTTGAAAATTTAAATTTAG
ATATAAAGAAGATAAAAATAATAAAAAAACACTTGTTGAATAATAAGAATAATAAGAAGGATGATGAAGATGCAGAATTT
AATAAATTATTTTTTGAATTATCCTGA

Domains


Predicted by InterproScan.

(59-232)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

61.938

88.11

0.546


Multiple sequence alignment