Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SP70585_RS00470 Genome accession   NC_012468
Coordinates   74901..75671 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae 70585     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69901..80671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP70585_RS00455 (SP70585_0093) - 71901..72338 (+) 438 WP_000076483.1 CoA-binding protein -
  SP70585_RS00460 (SP70585_0094) - 72576..73586 (-) 1011 WP_000009183.1 YeiH family protein -
  SP70585_RS00465 (SP70585_0095) - 73735..74904 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  SP70585_RS00470 (SP70585_0096) recO 74901..75671 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  SP70585_RS00475 (SP70585_0097) plsX 75668..76660 (+) 993 WP_000717462.1 phosphate acyltransferase PlsX -
  SP70585_RS00480 (SP70585_0098) - 76666..76899 (+) 234 WP_000136447.1 acyl carrier protein -
  SP70585_RS00485 (SP70585_0099) - 76936..77235 (+) 300 Protein_90 transposase family protein -
  SP70585_RS00490 (SP70585_0100) blpU 77438..77668 (+) 231 WP_001093486.1 bacteriocin-like peptide BlpU -
  SP70585_RS14100 (SP70585_0101) - 77671..77796 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  SP70585_RS13725 - 78204..78398 (+) 195 WP_000756776.1 hypothetical protein -
  SP70585_RS00505 (SP70585_0103) comR 78419..79312 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  SP70585_RS00510 (SP70585_0104) - 79855..80151 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=29972 SP70585_RS00470 WP_000616164.1 74901..75671(+) (recO) [Streptococcus pneumoniae 70585]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=29972 SP70585_RS00470 WP_000616164.1 74901..75671(+) (recO) [Streptococcus pneumoniae 70585]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment