Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   BVDSYZ_RS13440 Genome accession   NZ_CP030150
Coordinates   2702609..2703046 (-) Length   145 a.a.
NCBI ID   WP_015417817.1    Uniprot ID   -
Organism   Bacillus velezensis strain DSYZ     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2697609..2708046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVDSYZ_RS13390 (BVDSYZ_13390) sinI 2697993..2698166 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  BVDSYZ_RS13395 (BVDSYZ_13395) sinR 2698200..2698535 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BVDSYZ_RS13400 (BVDSYZ_13400) - 2698583..2699368 (-) 786 WP_007408329.1 TasA family protein -
  BVDSYZ_RS13405 (BVDSYZ_13405) - 2699433..2700017 (-) 585 WP_015240205.1 signal peptidase I -
  BVDSYZ_RS13410 (BVDSYZ_13410) tapA 2699989..2700660 (-) 672 WP_031378945.1 amyloid fiber anchoring/assembly protein TapA -
  BVDSYZ_RS13415 (BVDSYZ_13415) - 2700919..2701248 (+) 330 WP_039254490.1 DUF3889 domain-containing protein -
  BVDSYZ_RS13420 (BVDSYZ_13420) - 2701288..2701467 (-) 180 WP_003153093.1 YqzE family protein -
  BVDSYZ_RS13425 (BVDSYZ_13425) comGG 2701524..2701901 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  BVDSYZ_RS13430 (BVDSYZ_13430) comGF 2701902..2702402 (-) 501 WP_257738552.1 competence type IV pilus minor pilin ComGF -
  BVDSYZ_RS13435 (BVDSYZ_13435) comGE 2702311..2702625 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  BVDSYZ_RS13440 (BVDSYZ_13440) comGD 2702609..2703046 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  BVDSYZ_RS13445 (BVDSYZ_13445) comGC 2703036..2703344 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene
  BVDSYZ_RS13450 (BVDSYZ_13450) comGB 2703349..2704386 (-) 1038 WP_015417819.1 competence type IV pilus assembly protein ComGB Machinery gene
  BVDSYZ_RS13455 (BVDSYZ_13455) comGA 2704373..2705443 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  BVDSYZ_RS13460 (BVDSYZ_13460) - 2705636..2706586 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  BVDSYZ_RS13465 (BVDSYZ_13465) - 2706732..2708033 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16226.70 Da        Isoelectric Point: 10.1850

>NTDB_id=299718 BVDSYZ_RS13440 WP_015417817.1 2702609..2703046(-) (comGD) [Bacillus velezensis strain DSYZ]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPACTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=299718 BVDSYZ_RS13440 WP_015417817.1 2702609..2703046(-) (comGD) [Bacillus velezensis strain DSYZ]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGTCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATCCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566

Multiple sequence alignment