Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   DOP62_RS06300 Genome accession   NZ_CP030139
Coordinates   1316752..1318752 (-) Length   666 a.a.
NCBI ID   WP_208676343.1    Uniprot ID   A0AAN1UU77
Organism   Synechococcus elongatus PCC 11801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1311752..1323752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS06280 (DOP62_05620) - 1312562..1313794 (+) 1233 WP_208676351.1 NAD(P)/FAD-dependent oxidoreductase -
  DOP62_RS06285 (DOP62_05615) - 1313774..1314331 (-) 558 WP_208676349.1 hypothetical protein -
  DOP62_RS06290 (DOP62_05610) - 1314336..1315568 (-) 1233 WP_208676347.1 type II secretion system F family protein -
  DOP62_RS06295 (DOP62_05605) pilT 1315592..1316680 (-) 1089 WP_208676345.1 type IV pilus twitching motility protein PilT Machinery gene
  DOP62_RS06300 (DOP62_05600) pilB/pilB1 1316752..1318752 (-) 2001 WP_208676343.1 GspE/PulE family protein Machinery gene
  DOP62_RS06305 (DOP62_05595) grpE 1319038..1319661 (+) 624 WP_338462949.1 nucleotide exchange factor GrpE -
  DOP62_RS06310 (DOP62_05590) dnaK 1319767..1321734 (+) 1968 WP_208676341.1 molecular chaperone DnaK -
  DOP62_RS06315 (DOP62_05585) dnaJ 1321881..1323011 (+) 1131 WP_208676339.1 molecular chaperone DnaJ -
  DOP62_RS06320 (DOP62_05580) - 1323008..1323259 (+) 252 WP_208676336.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74265.88 Da        Isoelectric Point: 5.0802

>NTDB_id=299653 DOP62_RS06300 WP_208676343.1 1316752..1318752(-) (pilB/pilB1) [Synechococcus elongatus PCC 11801]
MPDQPISPRHALIALNQFSSFGNKLVQAGYVDSEQLQTALVESRRSGQSLPQVISALTGQSLPPELMQQFRRQQLFELKI
LHGVESLNPEQSQYSEELIHELIADLVPIETCRRHQLLPLERHEAPPRAVIAMVDPNNLDALDELNRLLRPRGYALQRLV
ITLEDYERLVAGYLDQQVERQQAAQAQQLGDFSEELANLESFDLTEISEQEEDLAKALQEADDAPIVSLANKILLKALTE
GASDIHVEPQEEGLRVRLRRDGVLHQEFGMLPKKIQAALISRLKIMANLDIAERRVPQDGRIRRMFQGRKIDFRVNSLPS
HFGEKICMRLLDNSATQLGLDQLITDPDALALVRDMGSRPYGLILVTGPTGSGKSTSLYSLLAERNDPAININTAEDPIE
YTLPGLTQVQVLREKGMNFASILRAFMRQDPDVILVGETRDLETARTAIEAALTGHLVLTTLHANDAPSAIARLSEMGVE
PYLVSGSLIGVVSQRLMRRVCPDCRIPYTPSPEELGRYGLSASQELDVTFYKARTLMADELAQARSQGQVCRTCRGTGYK
GRVGVYEVMRVNEVLQVAINQGLPTERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDRVTFTDSGVEAELKAKRKIGL
TCHTCGAGLQPEWLDCPYCLTPRFGN

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=299653 DOP62_RS06300 WP_208676343.1 1316752..1318752(-) (pilB/pilB1) [Synechococcus elongatus PCC 11801]
ATGCCAGACCAACCGATTTCCCCCCGCCACGCTCTGATTGCACTCAATCAGTTCTCATCGTTTGGTAACAAGCTGGTCCA
AGCAGGCTACGTCGACTCAGAGCAACTGCAGACAGCTTTAGTGGAAAGTCGGCGAAGTGGCCAGTCTCTGCCGCAAGTCA
TTTCAGCGCTGACTGGTCAGTCCTTACCGCCAGAGCTGATGCAGCAGTTCCGCCGGCAGCAGTTATTCGAGCTGAAGATT
CTGCACGGTGTCGAATCCCTGAATCCTGAACAAAGTCAGTATTCCGAAGAGTTAATTCATGAGCTGATTGCAGATCTCGT
CCCAATCGAAACCTGCCGTCGACACCAGCTCTTGCCCTTGGAACGACATGAGGCTCCCCCACGGGCGGTAATCGCCATGG
TGGACCCTAATAACCTCGATGCACTGGATGAACTTAATCGCCTGTTGCGCCCCAGAGGCTACGCGCTGCAGCGATTGGTG
ATCACACTGGAAGACTACGAACGACTCGTTGCGGGCTATCTCGATCAACAAGTCGAGCGTCAGCAGGCTGCCCAAGCCCA
GCAGTTGGGCGATTTTTCCGAAGAACTCGCCAATCTGGAAAGCTTCGATCTGACAGAAATTTCTGAACAGGAAGAAGATC
TTGCCAAGGCGCTCCAGGAAGCAGATGACGCCCCAATCGTCAGCCTTGCAAACAAGATTCTGCTGAAAGCCTTGACTGAA
GGTGCCTCGGATATTCACGTAGAACCGCAGGAGGAAGGGCTGCGGGTCAGGCTACGCCGAGATGGGGTGCTACACCAAGA
ATTTGGAATGCTCCCGAAAAAAATTCAAGCAGCCTTGATTTCCCGCTTGAAGATCATGGCCAATCTTGATATCGCCGAGC
GTCGTGTTCCCCAAGACGGCCGAATCCGGCGCATGTTTCAGGGCCGCAAGATTGACTTTCGGGTTAATAGTCTGCCTAGC
CATTTCGGCGAAAAAATTTGTATGCGGCTGTTGGACAACTCAGCAACACAGCTGGGTTTAGATCAGTTGATTACCGATCC
AGATGCCCTCGCTCTGGTTCGTGACATGGGAAGTCGTCCCTATGGCTTGATTTTGGTGACTGGCCCAACAGGGTCTGGTA
AGTCCACAAGCTTGTATTCCTTGTTGGCAGAGCGCAATGATCCCGCCATCAACATCAACACCGCTGAAGATCCAATTGAA
TACACATTGCCCGGTCTGACCCAAGTGCAGGTGCTCCGAGAGAAGGGCATGAATTTCGCCTCGATCCTGAGGGCTTTTAT
GCGTCAGGATCCCGATGTGATTCTGGTGGGTGAGACACGAGATTTAGAAACAGCTCGCACAGCGATTGAAGCTGCCTTGA
CAGGGCACTTGGTCTTGACGACTCTACATGCCAACGATGCGCCCAGCGCGATTGCCCGTCTAAGTGAGATGGGGGTAGAA
CCTTATCTCGTCTCTGGTTCGCTGATTGGGGTTGTTTCACAACGCTTAATGCGCCGAGTCTGTCCTGATTGCCGCATTCC
CTATACGCCCAGCCCAGAAGAACTAGGTCGCTATGGTCTCTCAGCCAGCCAGGAACTTGATGTCACATTTTATAAGGCCA
GAACACTAATGGCTGACGAGCTCGCACAGGCGCGATCGCAAGGGCAGGTGTGCAGAACCTGTCGGGGGACAGGCTACAAG
GGACGTGTAGGTGTCTATGAGGTGATGCGGGTTAATGAGGTCCTCCAAGTCGCGATTAACCAGGGGCTACCCACAGAACG
CCTCAAGGAAATTGCTGTGGAGCAGGGCATGAAGACGCTGCTCTCTTACAGCTTGGAACTGGTTCGCCAGGGTTACACCA
CCTTTGAAGAAGTCGATCGCGTCACCTTTACCGATTCTGGTGTGGAGGCTGAGCTCAAAGCAAAGCGTAAAATTGGTCTC
ACTTGCCATACCTGTGGGGCAGGGCTGCAACCGGAATGGCTGGACTGCCCTTATTGCCTAACGCCCCGTTTTGGGAATTA
A

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(25-177)

Type II/IV secretion system protein (T2SSE)

(232-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

61.818

99.099

0.613

Multiple sequence alignment