Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ES969_RS00140 Genome accession   NZ_CP035402
Coordinates   28380..28976 (+) Length   198 a.a.
NCBI ID   WP_003225425.1    Uniprot ID   G4NT17
Organism   Bacillus subtilis strain SRCM103576     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23380..33976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES969_RS00110 (ES969_00110) sleL 23394..24677 (-) 1284 WP_014478586.1 glycoside hydrolase family 18 protein -
  ES969_RS00115 (ES969_00115) yaaI 24747..25279 (-) 533 Protein_16 isochorismatase family cysteine hydrolase -
  ES969_RS00120 (ES969_00120) tadA 25365..25850 (+) 486 WP_003226784.1 tRNA adenosine(34) deaminase TadA -
  ES969_RS00130 (ES969_00130) dnaX 26327..28018 (+) 1692 WP_014478588.1 DNA polymerase III subunit gamma/tau -
  ES969_RS00135 (ES969_00135) ebfC 28042..28365 (+) 324 WP_003225427.1 YbaB/EbfC family nucleoid-associated protein -
  ES969_RS00140 (ES969_00140) recR 28380..28976 (+) 597 WP_003225425.1 recombination protein RecR Machinery gene
  ES969_RS00145 (ES969_00145) yaaL 28994..29218 (+) 225 WP_003242387.1 YaaL family protein -
  ES969_RS00150 (ES969_00150) bofA 29285..29548 (+) 264 WP_003225421.1 sigma-K factor-processing regulator BofA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21974.53 Da        Isoelectric Point: 5.3504

>NTDB_id=299570 ES969_RS00140 WP_003225425.1 28380..28976(+) (recR) [Bacillus subtilis strain SRCM103576]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=299570 ES969_RS00140 WP_003225425.1 28380..28976(+) (recR) [Bacillus subtilis strain SRCM103576]
ATGCAATATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGATGTAGTATTAGATTTTGCGAAAGCATTAGTAAATGCGAAACGCAACC
TGACATATTGTTCAGTTTGCGGGCATATTACAGATCAGGACCCTTGCTATATATGTGAAGATACGCGCAGGGATAAGTCT
GTTATCTGTGTTGTGCAAGACCCTAAGGATGTTATCGCTATGGAGAAAATGAAGGAATACAACGGACAGTATCACGTTCT
TCACGGCGCTATTTCTCCAATGGACGGCATTGGACCGGAGGATATTAAAATACCAGAATTGTTAAAACGATTACAGGATG
ATCAAGTGACAGAAGTGATCCTCGCGACAAACCCTAATATAGAAGGGGAAGCAACGGCGATGTATATATCAAGGCTCCTC
AAGCCGTCTGGTATTAAGCTCTCCCGTATTGCCCACGGACTGCCCGTCGGCGGTGACTTGGAATATGCTGACGAGGTCAC
TCTTTCTAAAGCACTTGAAGGAAGACGCGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recR Streptococcus pneumoniae R6

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.041

98.99

0.515