Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ETA19_RS17345 Genome accession   NZ_CP035401
Coordinates   3303975..3304610 (-) Length   211 a.a.
NCBI ID   WP_029318425.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103837     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3298975..3309610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA19_RS17325 (ETA19_17325) yvzF 3300032..3300217 (-) 186 WP_003244599.1 YvzF family protein -
  ETA19_RS17330 (ETA19_17330) gerAA 3300335..3301783 (+) 1449 WP_128993402.1 spore germination receptor protein GerAA -
  ETA19_RS17335 (ETA19_17335) gerAB 3301752..3302849 (+) 1098 WP_029318427.1 spore germination receptor protein GerAB -
  ETA19_RS17340 (ETA19_17340) gerAC 3302846..3303967 (+) 1122 WP_122894692.1 spore germination receptor protein GerAC -
  ETA19_RS17345 (ETA19_17345) vraR 3303975..3304610 (-) 636 WP_029318425.1 two-component system response regulator LiaR Regulator
  ETA19_RS17350 (ETA19_17350) liaS 3304588..3305670 (-) 1083 WP_041333103.1 two-component system sensor histidine kinase LiaS -
  ETA19_RS17355 (ETA19_17355) liaF 3305667..3306392 (-) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  ETA19_RS17360 (ETA19_17360) liaG 3306426..3307298 (-) 873 WP_041850550.1 DUF4097 domain-containing protein -
  ETA19_RS17365 (ETA19_17365) liaH 3307399..3308076 (-) 678 WP_003228506.1 stress responsive protein LiaH -
  ETA19_RS17370 (ETA19_17370) liaI 3308103..3308483 (-) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23123.77 Da        Isoelectric Point: 5.0163

>NTDB_id=299542 ETA19_RS17345 WP_029318425.1 3303975..3304610(-) (vraR) [Bacillus subtilis strain SRCM103837]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=299542 ETA19_RS17345 WP_029318425.1 3303975..3304610(-) (vraR) [Bacillus subtilis strain SRCM103837]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTAGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACAAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTAGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACAGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403

Multiple sequence alignment