Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   DP112_RS09040 Genome accession   NZ_CP030125
Coordinates   1811239..1813023 (-) Length   594 a.a.
NCBI ID   WP_105142167.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806239..1818023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS09015 (DP112_09015) - 1806558..1806923 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  DP112_RS09020 (DP112_09020) - 1807046..1807948 (-) 903 WP_105151097.1 ABC transporter permease -
  DP112_RS09025 (DP112_09025) opp4B 1807962..1808918 (-) 957 WP_074391669.1 oligopeptide ABC transporter permease -
  DP112_RS09030 (DP112_09030) - 1808920..1809861 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  DP112_RS09035 (DP112_09035) - 1809864..1810862 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  DP112_RS09040 (DP112_09040) oppA 1811239..1813023 (-) 1785 WP_105142167.1 oligopeptide ABC transporter substrate-binding protein Regulator
  DP112_RS09045 (DP112_09045) pbp3 1813236..1814477 (+) 1242 WP_114866811.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DP112_RS09050 (DP112_09050) sufB 1814805..1816220 (-) 1416 WP_024387517.1 Fe-S cluster assembly protein SufB -
  DP112_RS09055 (DP112_09055) sufU 1816572..1817012 (-) 441 WP_114866812.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65646.31 Da        Isoelectric Point: 4.4154

>NTDB_id=299501 DP112_RS09040 WP_105142167.1 1811239..1813023(-) (oppA) [Streptococcus suis strain HA1003]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISLFGFDGNRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYYFKGQPKTSSLKVDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLDSAYEYIS
FNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYDPEKAKKL
LDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAIDM
YAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESEKVTAL
NKRVKNYDTNYGSASGNGIAYEGIELTADKGVAE

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=299501 DP112_RS09040 WP_105142167.1 1811239..1813023(-) (oppA) [Streptococcus suis strain HA1003]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTGTCTGATGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGTTTTGTTGATATCTCACTGTTCGGTTTCGATGGAAATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAGGTAAGAAAATTACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTGAGCCATTTACTA
TCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTTGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTGGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTACTTCAAGGGACAACCAAAAACAAGCTC
ATTGAAGGTTGATATTGTATCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCTGAGATGCCTG
TTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGACTCAGCTTATGAATATATCTCA
TTCAACCTTGGTAAATATGACGAGTCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACTTCG
TCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAATCAT
TGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAACTC
TTGGATGAAGCTGGTTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTACCTT
TGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTCGGCTTGAACG
TTGAACTTTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATCGATATG
TACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTCACG
CTTCGTGTCTGATGAAAACACTAAATTGTTGAATGCAATTAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTGAGA
ACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAAAAGGTTACAGCACTT
AACAAACGTGTGAAAAACTATGACACTAACTATGGTTCAGCTTCAGGAAATGGTATTGCTTATGAGGGTATCGAACTTAC
AGCTGATAAAGGTGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.749

99.832

0.926

Multiple sequence alignment