Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DP112_RS06980 Genome accession   NZ_CP030125
Coordinates   1392772..1394574 (-) Length   600 a.a.
NCBI ID   WP_105135981.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387772..1399574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS06955 (DP112_06955) - 1389216..1389701 (-) 486 WP_105135985.1 LURP-one-related family protein -
  DP112_RS06960 (DP112_06960) prsA 1389910..1390908 (-) 999 WP_105135984.1 peptidylprolyl isomerase PrsA -
  DP112_RS06965 (DP112_06965) - 1390971..1391690 (-) 720 WP_105136038.1 O-methyltransferase -
  DP112_RS06970 (DP112_06970) - 1391765..1392313 (-) 549 WP_024384845.1 DUF6630 family protein -
  DP112_RS06975 (DP112_06975) - 1392324..1392770 (-) 447 WP_114866655.1 hypothetical protein -
  DP112_RS06980 (DP112_06980) pepF 1392772..1394574 (-) 1803 WP_105135981.1 oligoendopeptidase F Regulator
  DP112_RS06985 (DP112_06985) coiA 1394803..1395744 (-) 942 WP_105135980.1 competence protein CoiA family protein Machinery gene
  DP112_RS06990 (DP112_06990) metG 1395808..1397811 (-) 2004 WP_105138729.1 methionine--tRNA ligase -
  DP112_RS06995 (DP112_06995) - 1398052..1398801 (-) 750 WP_114866656.1 hypothetical protein -
  DP112_RS07000 (DP112_07000) - 1398883..1399494 (-) 612 WP_114866657.1 DUF3885 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69160.36 Da        Isoelectric Point: 4.5756

>NTDB_id=299486 DP112_RS06980 WP_105135981.1 1392772..1394574(-) (pepF) [Streptococcus suis strain HA1003]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIEKVYVYASMKND
QDTREGKYQEFQAKAMGLYSVFSQAFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEEYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=299486 DP112_RS06980 WP_105135981.1 1392772..1394574(-) (pepF) [Streptococcus suis strain HA1003]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACCGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTCGACTCAGCGAAGAGCC
TTTTGACAATCAGCGAAACGCAACTTGGTCTTATGCGTCGTATTGAAAAAGTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATACCAGGAATTTCAAGCTAAAGCCATGGGCTTGTATTCGGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGTTGGAAGCCTTTAAGGCAGAAGAGCCAGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTTTAGCGGCTAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAGATTTTCGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
GGACGGTCACTTGGTGCCCCTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGCCAAGAAG
CATATGAGGCTATGTACGGTACCTACGAGCAGTTCCAGCATACCTACGCTAAGACTCTGCAGTCTAATGTTAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCTCTCAAA
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGAGTATTCGGCTATTGTGAAGGAAGCCTTTGAAAACCGCTGGATTGA
TGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACTCTTATCCATGAAACAGGTCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTCTTCTTGGCTGAAATTGCCTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAGGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGGTTCCGTGGCACTGTTT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCTATCTATAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAATGAGAAGTACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCAACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGCAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAGGCAGGCGTAGACATGACCAAGGAAGATTACCTCAACGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70

100

0.7

Multiple sequence alignment