Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DP112_RS00380 Genome accession   NZ_CP030125
Coordinates   64332..65483 (+) Length   383 a.a.
NCBI ID   WP_011922545.1    Uniprot ID   A0A075SNG0
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59332..70483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS00360 (DP112_00360) mutL 59686..61623 (+) 1938 WP_029172056.1 DNA mismatch repair endonuclease MutL -
  DP112_RS00365 (DP112_00365) ruvA 61662..62252 (+) 591 WP_114866094.1 Holliday junction branch migration protein RuvA -
  DP112_RS00370 (DP112_00370) - 62493..63062 (+) 570 WP_114866095.1 DNA-3-methyladenine glycosylase I -
  DP112_RS00375 (DP112_00375) cinA 63099..64280 (+) 1182 WP_114866096.1 competence/damage-inducible protein A Machinery gene
  DP112_RS00380 (DP112_00380) recA 64332..65483 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  DP112_RS00385 (DP112_00385) spx 65719..66117 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DP112_RS00390 (DP112_00390) - 66217..66483 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DP112_RS00395 (DP112_00395) ruvX 66483..66902 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  DP112_RS00400 (DP112_00400) - 66914..67234 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  DP112_RS11065 - 67519..67677 (+) 159 WP_164503888.1 hypothetical protein -
  DP112_RS00405 (DP112_00405) - 67707..68660 (-) 954 WP_114866097.1 IS30-like element ISSpn8 family transposase -
  DP112_RS00410 (DP112_00410) rpsJ 69132..69440 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  DP112_RS00415 (DP112_00415) rplC 69512..70138 (+) 627 WP_011921686.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40860.59 Da        Isoelectric Point: 4.8910

>NTDB_id=299461 DP112_RS00380 WP_011922545.1 64332..65483(+) (recA) [Streptococcus suis strain HA1003]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=299461 DP112_RS00380 WP_011922545.1 64332..65483(+) (recA) [Streptococcus suis strain HA1003]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGCTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAGGGGCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAGAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTGCTCTTGTCACAGCCAG
ACTCAGGAGAGCAGGGTCTTGAAATCGCTGGTAAGTTGATTGACTCTGGTGCTGTTGATTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATTGACGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGTAAACTCGGTGCATCTATTAACAAAACAAAAACAGTAGCTATTTTCATTAACCAATTGCGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCTCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAGAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAAATTCGTGTTCATTATGGTTT
GATTGAAGCAGATGGAGTTGAAGAGGTTGCGACCGAAGAAGCTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SNG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.224

92.167

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori 26695

57.879

86.162

0.499
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499

Multiple sequence alignment