Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ETA19_RS05175 Genome accession   NZ_CP035401
Coordinates   999349..999996 (+) Length   215 a.a.
NCBI ID   WP_015252479.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103837     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 994349..1004996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA19_RS05160 (ETA19_05160) glpD 994520..996187 (+) 1668 WP_128992574.1 glycerol-3-phosphate dehydrogenase -
  ETA19_RS05165 (ETA19_05165) pgcA 996319..998064 (+) 1746 WP_042977697.1 phosphoglucomutase -
  ETA19_RS05170 (ETA19_05170) yhcY 998213..999352 (+) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  ETA19_RS05175 (ETA19_05175) vraR 999349..999996 (+) 648 WP_015252479.1 two-component system response regulator YhcZ Regulator
  ETA19_RS05180 (ETA19_05180) yhdA 999993..1000517 (+) 525 WP_029726342.1 FMN-dependent NADPH-azoreductase -
  ETA19_RS05185 (ETA19_05185) yhdB 1000532..1000774 (-) 243 WP_003233373.1 YhdB family protein -
  ETA19_RS05190 (ETA19_05190) yhdC 1000975..1001298 (+) 324 WP_128992575.1 YqzG/YhdC family protein -
  ETA19_RS05195 (ETA19_05195) lytF 1001340..1002806 (-) 1467 WP_024573279.1 peptidoglycan endopeptidase LytF -
  ETA19_RS05200 (ETA19_05200) nsrR 1002960..1003400 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24149.78 Da        Isoelectric Point: 6.3034

>NTDB_id=299449 ETA19_RS05175 WP_015252479.1 999349..999996(+) (vraR) [Bacillus subtilis strain SRCM103837]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=299449 ETA19_RS05175 WP_015252479.1 999349..999996(+) (vraR) [Bacillus subtilis strain SRCM103837]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395