Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AB432_RS15315 Genome accession   NZ_CP030117
Coordinates   3092255..3092968 (-) Length   237 a.a.
NCBI ID   WP_048033011.1    Uniprot ID   A0A2Z4MIT6
Organism   Brevibacillus brevis strain DZQ7     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3087255..3097968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB432_RS15290 (AB432_015290) tenA 3087549..3088229 (+) 681 WP_048033007.1 thiaminase II -
  AB432_RS15295 (AB432_015295) - 3088214..3088996 (+) 783 WP_048033008.1 ABC transporter ATP-binding protein -
  AB432_RS15300 (AB432_015300) - 3088996..3089754 (+) 759 WP_039961545.1 ABC transporter permease -
  AB432_RS15305 (AB432_015305) - 3089751..3090782 (+) 1032 WP_048033009.1 ABC transporter substrate-binding protein -
  AB432_RS15310 (AB432_015310) - 3090872..3092254 (-) 1383 WP_048033010.1 sensor histidine kinase -
  AB432_RS15315 (AB432_015315) scnR 3092255..3092968 (-) 714 WP_048033011.1 response regulator transcription factor Regulator
  AB432_RS15320 (AB432_015320) - 3093120..3094031 (+) 912 WP_048033012.1 ABC transporter ATP-binding protein -
  AB432_RS15325 (AB432_015325) - 3094031..3094780 (+) 750 WP_048033013.1 ABC transporter permease -
  AB432_RS15330 (AB432_015330) - 3094793..3095524 (+) 732 WP_048033014.1 ABC transporter permease -
  AB432_RS15335 (AB432_015335) - 3095787..3096329 (-) 543 WP_048033015.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27090.41 Da        Isoelectric Point: 5.4349

>NTDB_id=299385 AB432_RS15315 WP_048033011.1 3092255..3092968(-) (scnR) [Brevibacillus brevis strain DZQ7]
MEEWKQKKVLIVEDELEIRNMIDGFLRKEGFSRIFHAGSCKEALVICASDKPDVAILDVMLPDGDGFGLLTSIRRFSQIP
VIFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLLVILRRVYAPPQIDRLPVFQLGDSTVDLEAAIVTRDHHEYAL
TAKEHALLRKLYENRGRIVTSDALCQSVWGDDYYGYENTLMVHMRRIREKIEPCPSTPEYLLTVRGLGYKLLVKEES

Nucleotide


Download         Length: 714 bp        

>NTDB_id=299385 AB432_RS15315 WP_048033011.1 3092255..3092968(-) (scnR) [Brevibacillus brevis strain DZQ7]
ATGGAAGAGTGGAAACAGAAAAAAGTGCTCATCGTGGAAGATGAGCTAGAAATCAGAAATATGATCGATGGATTTTTGCG
TAAGGAAGGATTCTCTCGTATTTTTCATGCGGGTAGTTGTAAAGAGGCGTTAGTGATATGTGCTTCGGACAAGCCTGATG
TCGCGATCCTGGATGTCATGCTTCCAGATGGAGATGGATTTGGACTTTTGACTTCGATTCGTCGTTTCTCGCAAATCCCT
GTCATTTTTCTGTCAGCGAGAGGGGAAGATGAAGATCGATTGCTCGGACTTGGCCTTGGTGCTGACGACTATATCGTGAA
GCCATTTTTGCCGCGCGAGCTCGTTCTTCGTCTCCTGGTCATTTTACGACGCGTTTACGCTCCTCCCCAAATCGATCGTC
TGCCCGTTTTCCAGCTTGGTGACAGTACAGTCGATTTGGAGGCGGCCATCGTGACGAGAGATCACCACGAATACGCATTG
ACTGCCAAGGAACACGCCCTCTTACGAAAACTCTATGAAAACCGGGGACGAATTGTCACGAGCGATGCCCTGTGCCAATC
CGTCTGGGGTGACGATTACTACGGGTATGAAAACACGTTGATGGTTCATATGCGGCGCATTCGCGAAAAGATCGAGCCAT
GTCCGTCTACCCCTGAATATTTGCTGACAGTAAGAGGACTCGGATACAAATTACTCGTAAAGGAAGAGTCGTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4MIT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.304

97.046

0.498
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401
  vicR Streptococcus mutans UA159

41.048

96.624

0.397

Multiple sequence alignment