Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DPV67_RS12530 Genome accession   NZ_CP030106
Coordinates   2552726..2553367 (-) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii strain DA33382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2547726..2558367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPV67_RS12510 (DPV67_12510) aroK 2548642..2549211 (-) 570 WP_000643712.1 shikimate kinase AroK -
  DPV67_RS12515 (DPV67_12515) pilQ 2549223..2551388 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  DPV67_RS12520 (DPV67_12520) pilP 2551451..2551978 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  DPV67_RS12525 (DPV67_12525) pilO 2551989..2552729 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  DPV67_RS12530 (DPV67_12530) pilN 2552726..2553367 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  DPV67_RS12535 (DPV67_12535) pilM 2553367..2554425 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  DPV67_RS12540 (DPV67_12540) ponA 2554587..2557142 (+) 2556 WP_072292235.1 penicillin-binding protein PBP1a -
  DPV67_RS12545 (DPV67_12545) - 2557160..2557984 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  DPV67_RS12550 (DPV67_12550) - 2557987..2558319 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=299270 DPV67_RS12530 WP_000201229.1 2552726..2553367(-) (pilN) [Acinetobacter baumannii strain DA33382]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=299270 DPV67_RS12530 WP_000201229.1 2552726..2553367(-) (pilN) [Acinetobacter baumannii strain DA33382]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714

Multiple sequence alignment