Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ETA18_RS00320 Genome accession   NZ_CP035400
Coordinates   59470..59700 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM103835     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54470..64700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS00290 (ETA18_00290) ridA 54634..55011 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ETA18_RS00295 (ETA18_00295) spoVG 55206..55499 (+) 294 WP_003218346.1 septation regulator SpoVG -
  ETA18_RS00300 (ETA18_00300) glmU 55692..57062 (+) 1371 WP_128992310.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ETA18_RS00305 (ETA18_00305) prsS 57085..58038 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ETA18_RS00310 (ETA18_00310) rplYB 58123..58737 (+) 615 WP_128992311.1 50S ribosomal protein L25/general stress protein Ctc -
  ETA18_RS00315 (ETA18_00315) pth 58844..59410 (+) 567 WP_128992312.1 aminoacyl-tRNA hydrolase -
  ETA18_RS00320 (ETA18_00320) subA/fin 59470..59700 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ETA18_RS00325 (ETA18_00325) mfd 59770..63303 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  ETA18_RS00330 (ETA18_00330) spoVT 63439..63975 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=299271 ETA18_RS00320 WP_003243417.1 59470..59700(+) (subA/fin) [Bacillus subtilis strain SRCM103835]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=299271 ETA18_RS00320 WP_003243417.1 59470..59700(+) (subA/fin) [Bacillus subtilis strain SRCM103835]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment