Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   DPV67_RS12525 Genome accession   NZ_CP030106
Coordinates   2551989..2552729 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain DA33382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2546989..2557729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPV67_RS12505 (DPV67_12505) aroB 2547531..2548613 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  DPV67_RS12510 (DPV67_12510) aroK 2548642..2549211 (-) 570 WP_000643712.1 shikimate kinase AroK -
  DPV67_RS12515 (DPV67_12515) pilQ 2549223..2551388 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  DPV67_RS12520 (DPV67_12520) pilP 2551451..2551978 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  DPV67_RS12525 (DPV67_12525) pilO 2551989..2552729 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  DPV67_RS12530 (DPV67_12530) pilN 2552726..2553367 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  DPV67_RS12535 (DPV67_12535) pilM 2553367..2554425 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  DPV67_RS12540 (DPV67_12540) ponA 2554587..2557142 (+) 2556 WP_072292235.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=299269 DPV67_RS12525 WP_000076101.1 2551989..2552729(-) (pilO) [Acinetobacter baumannii strain DA33382]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=299269 DPV67_RS12525 WP_000076101.1 2551989..2552729(-) (pilO) [Acinetobacter baumannii strain DA33382]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGAGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAGGATAACAAGTCTGATATTCCTGTACTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment