Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ETA10_RS17115 Genome accession   NZ_CP035397
Coordinates   3166483..3167118 (-) Length   211 a.a.
NCBI ID   WP_046160834.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103773     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3161483..3172118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA10_RS17095 (ETA10_17095) yvzF 3162540..3162725 (-) 186 WP_003244599.1 YvzF family protein -
  ETA10_RS17100 (ETA10_17100) gerAA 3162843..3164291 (+) 1449 WP_003243555.1 spore germination receptor protein GerAA -
  ETA10_RS17105 (ETA10_17105) gerAB 3164260..3165357 (+) 1098 WP_046160832.1 spore germination receptor protein GerAB -
  ETA10_RS17110 (ETA10_17110) gerAC 3165354..3166475 (+) 1122 WP_046160833.1 spore germination receptor protein GerAC -
  ETA10_RS17115 (ETA10_17115) vraR 3166483..3167118 (-) 636 WP_046160834.1 two-component system response regulator LiaR Regulator
  ETA10_RS17120 (ETA10_17120) liaS 3167096..3168178 (-) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  ETA10_RS17125 (ETA10_17125) liaF 3168175..3168900 (-) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  ETA10_RS17130 (ETA10_17130) liaG 3168934..3169806 (-) 873 WP_046160835.1 DUF4097 domain-containing protein -
  ETA10_RS17135 (ETA10_17135) liaH 3169907..3170584 (-) 678 WP_046160836.1 stress responsive protein LiaH -
  ETA10_RS17140 (ETA10_17140) liaI 3170611..3170991 (-) 381 WP_046160837.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23095.72 Da        Isoelectric Point: 5.0163

>NTDB_id=299239 ETA10_RS17115 WP_046160834.1 3166483..3167118(-) (vraR) [Bacillus subtilis strain SRCM103773]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=299239 ETA10_RS17115 WP_046160834.1 3166483..3167118(-) (vraR) [Bacillus subtilis strain SRCM103773]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGTTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403

Multiple sequence alignment