Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DOU34_RS13755 Genome accession   NZ_CP030097
Coordinates   2792522..2793166 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2787522..2798166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS13720 - 2788701..2789132 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  DOU34_RS13725 - 2789132..2789473 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  DOU34_RS13730 - 2789466..2790953 (+) 1488 WP_032867186.1 Na+/H+ antiporter subunit D -
  DOU34_RS13735 - 2790959..2791435 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  DOU34_RS13740 - 2791435..2791719 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  DOU34_RS13745 mnhG 2791703..2792077 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  DOU34_RS13750 - 2792117..2792500 (-) 384 WP_061047114.1 hotdog fold thioesterase -
  DOU34_RS13755 comA 2792522..2793166 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  DOU34_RS13760 comP 2793247..2795538 (-) 2292 WP_042635452.1 histidine kinase Regulator
  DOU34_RS13765 comX 2795550..2795714 (-) 165 WP_007613432.1 competence pheromone ComX -
  DOU34_RS13770 - 2795714..2796625 (-) 912 WP_079891433.1 polyprenyl synthetase family protein -
  DOU34_RS13775 degQ 2796777..2796917 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  DOU34_RS13785 - 2797380..2797721 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=299137 DOU34_RS13755 WP_003152052.1 2792522..2793166(-) (comA) [Bacillus amyloliquefaciens strain SH-B74]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=299137 DOU34_RS13755 WP_003152052.1 2792522..2793166(-) (comA) [Bacillus amyloliquefaciens strain SH-B74]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment